Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0858 ATGGGTACTTCTCAGCCGACCAAGCTCTTCCATAGAACGCAGAATCTTCTATTCTGGTTGAGAAAAAGCACCGCTCCTCGTGGCAGAAGAATCTTCCATAGAGATGTCGAGCATCAGCAAGAATTTCGATACGCAACCGCTTGTTGTCTCTCTTCGTACTATAGTGTCTTTGTCGCTCGCCTCGCTATTATGGTCATGCTAGCTATTCTAATTGGGTTACTAACCATGCTAACATGGCATTTCACGAAGACCTACACCGCACGGTCCCTAGACAGCTTAGCATACGGCCTCAGGTACGAGATTCTCCAACGTCCGATCCTACGGATGTGGAGCATCTTGAATTCCACCTCAGAAATAACAACCTCACAAGGTAAGCTTTCTGAGTACGTCATAAGACGTTATAGCAAGCCGACTAATCAAGCTGAACAAGTCGAGTTATACGAAGCAATGAGGGACGTAACGTGGGCCTTGTTTGCTAGCCGTAAGGCTCTCAATGCGATAACTATTAACTTCCGAAACGGTTTCGTCCAAGCATTCCATAGAGACCACAGAAGCAACAACACATTCTACATCTATTCGGACCTCTCCAACTACTCCATCAACTCAGGCGATCAATCTTACAATCAAGGGTGGAAAGAGCTACTGATCCACAGTAACATATCTGCCATCTGGTACCGGGAACCACTTGACCCCACTACCGGAGAGAAGATAGGAAAACCGATGCGGATCCCACCTGAGGATCTAATCAACATAGCTGGGATATCTCAAGTACCAGATGGAGTAGCCTCTTGGCATGTGATGGTTAGTAAGTACGTTGACTCTCCCTTACTATCGGCCGCTCTTCCAGTTTCAGACCCGGCCAATGAGAGCATAGTAGCCGTTGTAGGCGTCACTATGGCGCTTTATAGCGTAGGCCAGTTAATGAAAGAGCTTGTAGAATTTCATTCGGGACATATCTACTTGACATCTCAAGAAGGGTACTTGCTTGCTAGTTCGGGTAATGCCCCACTTTTGACTAATAATGCCACGGTTGGCCCGAAGCTCATGACGGCCATTGAATCCAAGGACGATGTTATACGGATGGGAGCTGATTGGTTGAAGAGAAGTTACAGAAAAAAGTATTCTCCTAGTCATGAAGTTCATGCTGAAAATGTTCGGCTTGGAAACGAACAATATTATATTGACTCGTTTTCCCTCAATTTAAAGAGGCTTCCTCTTGTGGGGGTTATTATAATTCCGAGGAGGTATATAATGGGAAAGGTCGATGAGCGAGCTTTTAAGACATTGGTTATACTAATTTCCGCATCGTTATGTATGTTAGTGATCGGATGTGTCTGCATTTTGATCCTGACTAATGGAGTGTCTAAGGAAATGAAACTAAGAGCTGAATTGATAAGTCATTTTGATGCAAGAAGAAGAGCAGAGGCTTCTAATAACTACAAGACCCAATTTCTAGCAAATATGAGCCATGAATTGAGAACACCAATGGCAGCCGTTATAGGATTACTCGATATTCTGATATGCGATGATTGCCTTACAAATGAACAGTACTCTACAGTTACCCAAATCCGGAAATGTTCTATGGCTCTTCTCAGGCTTCTTAACAACATATTGGATCTAAGCAAGGTAGAATCTGGGAAACTAGTTTTGGAAGAAGCCGAGTTTGATTTGGTACGGGAGCTTGAAGGGCTTGTCGATATGTTCTCTGTCCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTCTCTGATGACATTCCAAAACTAGTTCGAGGAGACTCTGCTAGAGTCGTGCAAGTATTCGCGAATTTAATCAGCAATTCTATCAAGTTTACAACATCGGGCCATGTTCTTGTTCGAGGATGGTGTGAGAACCCGAATAGTTTCAACAATGATAAGAAGAGATCATCAAGGTTTGGAAATCGGACGAGGATGATTAATACAAGGAAGGACAGTAGGAAAGAAAACAAGATGACTCTCTGGTTTGAAGTTGATGACACTGGCTGTGGGATTGATCCATCCAAATCGGAATCTGTCTTTGAAAGTTTTGAGCAGGCCGATCCCTCTACTAGCCGAACACATGGAGGCACTGGTCTCGGACTATGCATTGTTCGGAATCTGGTGAACAAGATGGGTGGAGAGATCAAAGTCGTAAAGAAACATGGTCCGGGCACCTTAATGCGCCTATATCTTGTTCTTAGTACTCCCTTAGATTCAATAGAACAACACTTTCAAACCGATTTTGCAAAGCATAATATAGTGTTACTGCTAGCTATCCGTGGGAGAACGAGCAGATTCCTCATGTCAAAGTGGCTTAAAAAAATCGGACTACTTACTTTAGAAGCTTCTGAGTGGAATGAATTGACACAAATTCTTCAAGAACTTTATTGGGCGAAAACTAGTTCGGTCCGTGGTAACGGATTAATGGATGGACAGGATTATTCACTGAGTGAACATTTAAGAGATGAGTTAGTTAAGATTCAAGACAACATGAGAAACAGAGTCCTCGTTCCGGTTGTTGATATAGGGCTACTAGACTTGAGCACCGATATATGGAAAGAACAACTAAACTTTCTCGAAAAATATTCCGAAAAGGCCAAGTTTGCATGGATATTAAACCACGACACGTCCAATTCCGTAAAGACTAAGCTCCGGGAAAAAGGGCATGATTTGATGGTAAACAAGCCGCTTTACAAGGCAAAAATGGTTCATATTCTAGAAGCTGTTGTAAAGGAGAAAAATGCAGAGAAGAGAAGTTCAAAAGAAGGGGATTTTGTGGAATGTCTTGAGATTGATTCTAGTCATGATTTTGATCGGGCTAGTTCGGATGATTCCGACATCTCTATTGAGTTAAGTCATGTATGCACTTCAAAGGGAAGTCTAAAGGAGTCATCTTCTTCTCTTGAAGGCTTACATATTCTTCTTGCAGAAGATACTCCGGTCTTACAAAGGGTTGCTAGCATTATGCTCGAAAAAATGGGAGCTACGGTTATTGCGGTAGAGGACGGATTACAAGCCGTAGATGCTCTAGAATCTCTTTTCAAAGAGAGGAAGAGAGAATCTCGAAACGAAATTTCCGAGCACCCTTCGTTTGACTTGGTGTTAATGGATTGTCAAATGCCAAGGATGGATGGTTATGAAGCGACAAAGGCGATTAGGAAAGCAGAAATTGGGACAAGGTTTCACATTCCGATTGTTGCGTTGACGGCTCATGCCATGTCATCGGATGAAGCCAAGTGCTTTGAGGTGGGAATGGATGCTTATCTTACTAAGCCTATTGATTATAAGTTGATGGTATCTACCATTCTTTCACTCACTAAGAGAAGGGTATAA 3336 42.75 MGTSQPTKLFHRTQNLLFWLRKSTAPRGRRIFHRDVEHQQEFRYATACCLSSYYSVFVARLAIMVMLAILIGLLTMLTWHFTKTYTARSLDSLAYGLRYEILQRPILRMWSILNSTSEITTSQGKLSEYVIRRYSKPTNQAEQVELYEAMRDVTWALFASRKALNAITINFRNGFVQAFHRDHRSNNTFYIYSDLSNYSINSGDQSYNQGWKELLIHSNISAIWYREPLDPTTGEKIGKPMRIPPEDLINIAGISQVPDGVASWHVMVSKYVDSPLLSAALPVSDPANESIVAVVGVTMALYSVGQLMKELVEFHSGHIYLTSQEGYLLASSGNAPLLTNNATVGPKLMTAIESKDDVIRMGADWLKRSYRKKYSPSHEVHAENVRLGNEQYYIDSFSLNLKRLPLVGVIIIPRRYIMGKVDERAFKTLVILISASLCMLVIGCVCILILTNGVSKEMKLRAELISHFDARRRAEASNNYKTQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYSTVTQIRKCSMALLRLLNNILDLSKVESGKLVLEEAEFDLVRELEGLVDMFSVQCINHNVETVLDLSDDIPKLVRGDSARVVQVFANLISNSIKFTTSGHVLVRGWCENPNSFNNDKKRSSRFGNRTRMINTRKDSRKENKMTLWFEVDDTGCGIDPSKSESVFESFEQADPSTSRTHGGTGLGLCIVRNLVNKMGGEIKVVKKHGPGTLMRLYLVLSTPLDSIEQHFQTDFAKHNIVLLLAIRGRTSRFLMSKWLKKIGLLTLEASEWNELTQILQELYWAKTSSVRGNGLMDGQDYSLSEHLRDELVKIQDNMRNRVLVPVVDIGLLDLSTDIWKEQLNFLEKYSEKAKFAWILNHDTSNSVKTKLREKGHDLMVNKPLYKAKMVHILEAVVKEKNAEKRSSKEGDFVECLEIDSSHDFDRASSDDSDISIELSHVCTSKGSLKESSSSLEGLHILLAEDTPVLQRVASIMLEKMGATVIAVEDGLQAVDALESLFKERKRESRNEISEHPSFDLVLMDCQMPRMDGYEATKAIRKAEIGTRFHIPIVALTAHAMSSDEAKCFEVGMDAYLTKPIDYKLMVSTILSLTKRRV 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8501919 8506443 + Conep08aG0088400.1 Cone8ag0858 443407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0858 1111 CDD REC_hyHK_CKI1_RcsC-like 974 1103 - -
Cone8ag0858 1111 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 593 733 IPR003594 -
Cone8ag0858 1111 CDD HisKA 481 542 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag0858 1111 ProSiteProfiles Response regulatory domain profile. 973 1107 IPR001789 GO:0000160(InterPro)
Cone8ag0858 1111 Pfam His Kinase A (phospho-acceptor) domain 481 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag0858 1111 FunFam Ethylene receptor 1 546 738 - -
Cone8ag0858 1111 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 467 547 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag0858 1111 PRINTS Bacterial sensor protein C-terminal signature 661 675 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag0858 1111 PRINTS Bacterial sensor protein C-terminal signature 696 714 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag0858 1111 PRINTS Bacterial sensor protein C-terminal signature 679 689 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag0858 1111 SUPERFAMILY CheY-like 970 1109 IPR011006 -
Cone8ag0858 1111 Gene3D - 548 737 IPR036890 -
Cone8ag0858 1111 SMART REC_2 972 1103 IPR001789 GO:0000160(InterPro)
Cone8ag0858 1111 Gene3D - 468 547 - -
Cone8ag0858 1111 SMART HisKA_10 480 546 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag0858 1111 Gene3D - 953 1109 - -
Cone8ag0858 1111 FunFam Histidine kinase 1-like protein 468 547 - -
Cone8ag0858 1111 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 535 732 IPR036890 -
Cone8ag0858 1111 PANTHER TWO-COMPONENT HISTIDINE KINASE 59 740 IPR050736 -
Cone8ag0858 1111 SMART HKATPase_4 593 736 IPR003594 -
Cone8ag0858 1111 Pfam Response regulator receiver domain 974 1102 IPR001789 GO:0000160(InterPro)
Cone8ag0858 1111 ProSiteProfiles Histidine kinase domain profile. 487 736 IPR005467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0419 Cone-Chr17:1969717 Cone8ag0858 Cone-Chr8:8501919 9.51E-55 dispersed
Cone8ag0858 Cone-Chr8:8501919 Cone9ag0376 Cone-Chr9:1690632 1.19E-43 dispersed
Cone20ag0760 Cone-Chr20:5339502 Cone8ag0858 Cone-Chr8:8501919 1.93E-14 transposed
Cone12ag0821 Cone-Chr12:7476353 Cone8ag0858 Cone-Chr8:8501919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46690 PF11831 Myb_Cef 6.30E-57 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0858 - - - 0.0