Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0872 ATGATGGATTTTATATCACACCTGTTTCGAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCTCGTCGTCTTTGTTGGGTAATTTCTTTGAAAGAGTTAGGGAAATCTGCGCTTACGCGATTTCTGCAATTCTGGGAAATATCTTCTCAGCGATCTTTACCCTCTTCTTTGCATTAGTGGGAACTTTGTTAGGAGCTATGACAGGAGCATTAATTGGTCAAGAAACAGAGAGCGGATTTGTCCGAGGAGCTGCTGTTGGGGCCATTTCCGGAGCAGTTTTCTCTATTGAAGTCTTCGAATCTTCACTCGTTCTTTGGAAATCCGATGATTCCGGTATAGGTTGCTTTCTCTACTTGATAGATGTTCTTGCAAGCCTCCTTAGTGGGAGGCTTGTTCGTGAGCGGATTGGTCCAGCCATGTTAAGTGCTGTACAAAGCCAAATGGGTGCTGTCGAGACGAGCTTTGATGATCTCCCAAATATTTTTGATACTGGTAGTAACAAAGGCTTGCCCGGAGATTCCGTTGAAAGGATTCCAAAGATCATGATTTCGAACAATAACAATGTAGATGCTTCTGGAGAGAAAGTTTGTTGCTCGGTTTGCCTTCAGGATTTCCAGCTCGGGGAGACGGTTAGAAGCTTACCTCATTGCCATCACATATTTCACTTACCATGCATAGATAAGTGGCTACTTACTCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 735 43.27 MMDFISHLFRISSSSSSSSSSPSSSLLGNFFERVREICAYAISAILGNIFSAIFTLFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWKSDDSGIGCFLYLIDVLASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDDLPNIFDTGSNKGLPGDSVERIPKIMISNNNNVDASGEKVCCSVCLQDFQLGETVRSLPHCHHIFHLPCIDKWLLTHGSCPLCRRDL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8586233 8589712 - Conep08aG0089800.1 Cone8ag0872 443421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0872 244 CDD RING-H2_NIPL1-like 198 241 - -
Cone8ag0872 244 SMART ring_2 199 240 IPR001841 -
Cone8ag0872 244 Pfam Ring finger domain 199 241 IPR001841 -
Cone8ag0872 244 SUPERFAMILY RING/U-box 192 244 - -
Cone8ag0872 244 Pfam YMGG-like Gly-zipper 59 94 IPR027367 -
Cone8ag0872 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 244 IPR013083 -
Cone8ag0872 244 FunFam NEP1-interacting protein-like 1 159 244 - -
Cone8ag0872 244 ProSiteProfiles Zinc finger RING-type profile. 199 241 IPR001841 -
Cone8ag0872 244 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 31 243 IPR044523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0872 Cone-Chr8:8586233 Cone9ag1459 Cone-Chr9:10819887 1.55E-15 dispersed
Cone19ag0063 Cone-Chr19:390709 Cone8ag0872 Cone-Chr8:8586233 5.81E-39 transposed
Cone12ag0839 Cone-Chr12:7573641 Cone8ag0872 Cone-Chr8:8586233 4.64E-143 wgd
Cone8ag0872 Cone-Chr8:8586233 Cone9ag1634 Cone-Chr9:11624420 8.97E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0872 - - - 0.0