Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0888 ATGTCAGTAGAGGAGAATGATATTGATGGAGTGCCAGAAAGCCATGTTGAAGATACTCCAGAACCTGAGAAACAATCTTCAGGCATAATTAGTAAGAGCAATGGAAATCTTGTTGTGGAGAATGGATTGGGTGATGGCGGCCAACACACTGATGATCATGACCAGCTTGTACAAATGGTCATTGATTTGAAGTCTCAGAATGAGTTCTTGAAGTCTCAACTACAAAACACTGAAAATGTTCAGTCCGGAAACAGTTTGTCCAAACAAGAAAAAGCAATCGGACAGGAAGAACGCCCAGTGGTTGGCGATGTGATAGAACTTCAAGAAAGAATAAACTCATTAAACAAAGAACTATTGGAAGAAAGACAAACAAGAGTTGCAGCAGAGGGAGCCCTGAAGCACCTTCGAGAAGCACACTCAGAAGCAGATATGAAATCTCAAGAACTCTCTGCAAAGCTTGCTGATGCTCAACGGAAGCTTGACCAGGAAATAAAAGAGCGTGATGAGAAATACTCTGAACTTGACTCAAAGTTTAGCAGGCTTCACAAACGTGCAAAACAGAGGATTCAAGATGTTCAGAAGGAAAAAGATGATCTTGAGGTCAGGTTTCATGATGTTAATGAAACAGCAGAGCGTGCCTTGTCCCAACAGGTCGCATTGCAACAAGAGCTGGAACGAACTCGGCAGCAAGCTACTGAAGCATTGAAAGCAATGGATGCAGAGAGGCAACAATTACGAAGTGCAAACAATAAGCTCCGAGACAACATAGAGGAACTGCGAAATTCATTGCAACCTAAAGAAAATGCTCTCGAGGCATTGCAACAGTCACTTTTGGAGAAGGATCAGATGCTGGAAGACATGCAAGGGCTTCTTCAAGCTGCTGAGGAGAAAAGGCAAGCTTCAATTGCTGAGCTCTCTGCTAAACATCAGAAGAGCTTGGAGAGTTTGGAGGCCCAAATAGCTGATGCTTTATCTGATAGGAACAAAGCAACTGAAACTATTTCTTCGCTGCAGGTAATGGTCGCAGAGAAAGAGTCAAAGATCGCAGAAATGGATGCAGCTTCAACTGGTGAGGCAGCACGCCTTAGAGCTGCTGCGGAAACCGTAAAAGGAGAAATTGCTCAATTGAGACATGAGCACGAGAAAGAAAAGGAGAGTTGGGAAGCTGCCTTGCAGGCATCGAAAGTGAGGCTTGAAATTGCTGAGAGTAATTGTATACGTGCTGAAATTGAAGCAGCTAAAACTAAAAGTCGGCTAGATTCAGAAGTTTCTGCACAAGCCCACATTTTGAGTACACGAGATGCTGAACTAGCAGCTGCGAAAGAAGAGGTCACCCGCCTTGAAGCTGAATTTTCTTCTTACAAGGCTCGTGCTCATGCGCTACTTCAGAAGAAGGATGCAGAACTAGCTGCAGCTGTGGATTCTGAACAAATTAATGCTCTCGAGGAAGCTATAAAGGAGGCTGAGAAAGAAGTAATGTCAGTATCAGCAGAAAAGGATCAGGCTATGCTAGATCTTCAGAATGCTTTGGCTAGTCATGATAAAGAACTCGCAAAAAGAGAGACAGCCCTTACTGAGGCCAAGCAGCAGATAAAGAGTTTAGAAACAAAGCTTGATTCTGCTATTACCCATCTCCATTCAGAGAAAGAAGCATGGGAAATGACCCTCAAAAACCAGGAAGAAATATGGCGCATCAGATGTGAAGCACTGAAGGAAGAAACTGAAGCATCCTCTGGGCAGGATGTGCAAAAAGAATTGGAAGAACTCAAACTGGGATACAAGAGATTGAAGGAAGAGCATAATTCATTCCGTGATCTTGCTGATAAAATGATTGGGGAGAAGGATAAAGAAATCTCCAAGCTCTTAGATGACAATGAGAATCTTCGCCGATCTCTGGAATCAAGACCACTGGCTGATCATGGTGACGGAAATGAAGTCATCCAAACACAGGATGCATCAAATATAAGCACCTCTGCTGCAGAACAGCAAATTCTGCTTCTAGCAAGGCAGCAAGCTCAAAGAGAGGAAGAACTAGCACAATCACAGCGGCATATATTAGCACTTCAAGAGGAACTTGAGGAGCTGGAACGTGAGAATCGCCTTCACAGCCAACAGGAAGCCATGTTGAAAGATGAGCTTCGTAACATGGAGAGATCGCAGAAGAGGGAAGGGGTGGATATGACATATCTTAAGAATGTCATCTTGAAGCTTCTTGAAACAGGTGAAGTTGAGGCTTTGCTACCCGTGGTTGGGATGCTTCTTCAATTTAGTCCTGATGAGATGCAGAAGTGTCAACAAGCATACCGCAACTCTGTTGAGGTTGTTCCACCAAGCACAGCAAGCGACGGAGGATCTGCTCTCTCGCTTTTCTCACGATTCTCATTTTCATAA 2391 43.87 MSVEENDIDGVPESHVEDTPEPEKQSSGIISKSNGNLVVENGLGDGGQHTDDHDQLVQMVIDLKSQNEFLKSQLQNTENVQSGNSLSKQEKAIGQEERPVVGDVIELQERINSLNKELLEERQTRVAAEGALKHLREAHSEADMKSQELSAKLADAQRKLDQEIKERDEKYSELDSKFSRLHKRAKQRIQDVQKEKDDLEVRFHDVNETAERALSQQVALQQELERTRQQATEALKAMDAERQQLRSANNKLRDNIEELRNSLQPKENALEALQQSLLEKDQMLEDMQGLLQAAEEKRQASIAELSAKHQKSLESLEAQIADALSDRNKATETISSLQVMVAEKESKIAEMDAASTGEAARLRAAAETVKGEIAQLRHEHEKEKESWEAALQASKVRLEIAESNCIRAEIEAAKTKSRLDSEVSAQAHILSTRDAELAAAKEEVTRLEAEFSSYKARAHALLQKKDAELAAAVDSEQINALEEAIKEAEKEVMSVSAEKDQAMLDLQNALASHDKELAKRETALTEAKQQIKSLETKLDSAITHLHSEKEAWEMTLKNQEEIWRIRCEALKEETEASSGQDVQKELEELKLGYKRLKEEHNSFRDLADKMIGEKDKEISKLLDDNENLRRSLESRPLADHGDGNEVIQTQDASNISTSAAEQQILLLARQQAQREEELAQSQRHILALQEELEELERENRLHSQQEAMLKDELRNMERSQKREGVDMTYLKNVILKLLETGEVEALLPVVGMLLQFSPDEMQKCQQAYRNSVEVVPPSTASDGGSALSLFSRFSFS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8676627 8686581 + Conep08aG0091400.1 Cone8ag0888 443437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0888 796 Coils Coil 359 418 - -
Cone8ag0888 796 ProSiteProfiles GRIP domain profile. 720 767 IPR000237 -
Cone8ag0888 796 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 48 778 - GO:0007131(PANTHER)
Cone8ag0888 796 Coils Coil 510 544 - -
Cone8ag0888 796 MobiDBLite consensus disorder prediction 74 90 - -
Cone8ag0888 796 Coils Coil 579 606 - -
Cone8ag0888 796 Coils Coil 471 505 - -
Cone8ag0888 796 Coils Coil 104 124 - -
Cone8ag0888 796 Coils Coil 139 173 - -
Cone8ag0888 796 MobiDBLite consensus disorder prediction 74 98 - -
Cone8ag0888 796 Coils Coil 60 80 - -
Cone8ag0888 796 Coils Coil 182 304 - -
Cone8ag0888 796 Coils Coil 611 631 - -
Cone8ag0888 796 SMART 1grip 723 767 IPR000237 -
Cone8ag0888 796 MobiDBLite consensus disorder prediction 1 52 - -
Cone8ag0888 796 Pfam GRIP domain 724 764 IPR000237 -
Cone8ag0888 796 Gene3D - 158 313 - -
Cone8ag0888 796 MobiDBLite consensus disorder prediction 8 22 - -
Cone8ag0888 796 Coils Coil 306 333 - -
Cone8ag0888 796 Coils Coil 671 712 - -
Cone8ag0888 796 MobiDBLite consensus disorder prediction 24 38 - -
Cone8ag0888 796 Coils Coil 430 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0888 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0858 Cone-Chr12:7701430 Cone8ag0888 Cone-Chr8:8676627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36