Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0889 ATGGATATTTACGTTGAGAACAATCCTAACTTGATCAAACCCACTAATTTTTCAGGGAATATGGAAGGAAGGAAATTTGGGCAGGAGATTAGTAACAAAAGGAGGGCATTAGGTGTTATTAATCAGAATGTGGGAATTCAAGCTAGCAAGAGAGCTTTATCTGGAAAACATGAAATGGGTGAAAAGAAGCAAGCTGATCCATTACATAGACCAATTACCAGAAAGTTCGCTGCAGTAATTTCAAAAAGTCAGCCACTTTGTCCCCAGGAAAGCAACAAGCTGAAGATAAACGAATCAGTAGATTCGATCTCTATATATATAGATGAAGATTGCAAGGCATCAAAAGAATACCATCCAATAATTCCCATGTTCTTAGAAGAAGCAGATGAAGCCATTATTCAGGAGGTTGAAATGGATGATATAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAGCCTGTTATAGATATAGACGGATGTGATGCAAAGAACCCACTTGTAGTTGTTGATTATGTGGATGATCTTTATGCATTTTACAGAAAGATGGAGGTTCATAACTGTGTTTTACCAATTTACATGGAGCAACAGTTTGACATTAATGAGAGGATGAGGGCCATATTGATTGACTGGCTTATTGAGGTGCATGACAAGTTTGAATTGATGGGAGAGACATTGTTTCTAACAGTGAACATAATAGACAGATTTCTGGCCCAACAGACAGTGGTGAGAAAGAAGCTTCAGCTAGTAGGACTAGTTGCTTTGCTCTTGGCTTGCAAATATGAAGAGGTTTCTGTTCCCATTGTAGAGGACTTGGTCCTTATTTCAGACAAAGCTTACTCTAGACAAGAAGTCCTTGAAATGGAGACACTCATGCTCAACAAACTACAGTTCAACATGTCAGTTCCAACTCCATATGTCTTCATGCAAAGGTTCCTCAAGGCTAGTACAACTAATACTACTCAGTCCGAGAAGAAGAAGCTAGAGCTACTATCCTTCTTCTTGATAGAGCTTTCATTGGTTGAGTATGAAATGATCAAGTTCTCTCCTTCTTTATTAGCTGCTGCTGCTATCTACACCGCTCAGTGCACTCTTCATGGGTTTAAGCAGCAGTGGAGCCGGACCTGTGAATGGCATTCCGGCTACTCTCAAGACAAGCTATTAGAATGTTCAAGAATGATGGTGGGTTTTCACAAGAAGGCAGCAACAGGGAAATTGACAGGAGTGTATAGGAAGTATAGTACATCAAAGCATTCATATACTTCAAGAAGTGAGGCAGCTTGTTTTCTTTTGGAGACACGAGAAATATAA 1308 39.3 MDIYVENNPNLIKPTNFSGNMEGRKFGQEISNKRRALGVINQNVGIQASKRALSGKHEMGEKKQADPLHRPITRKFAAVISKSQPLCPQESNKLKINESVDSISIYIDEDCKASKEYHPIIPMFLEEADEAIIQEVEMDDIEEEEKEEEEEEPVIDIDGCDAKNPLVVVDYVDDLYAFYRKMEVHNCVLPIYMEQQFDINERMRAILIDWLIEVHDKFELMGETLFLTVNIIDRFLAQQTVVRKKLQLVGLVALLLACKYEEVSVPIVEDLVLISDKAYSRQEVLEMETLMLNKLQFNMSVPTPYVFMQRFLKASTTNTTQSEKKKLELLSFFLIELSLVEYEMIKFSPSLLAAAAIYTAQCTLHGFKQQWSRTCEWHSGYSQDKLLECSRMMVGFHKKAATGKLTGVYRKYSTSKHSYTSRSEAACFLLETREI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8686330 8689212 - Conep08aG0091500.1 Cone8ag0889 443438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0889 435 PIRSF Cyclin_A_B_D_E 7 434 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone8ag0889 435 FunFam G2/mitotic-specific cyclin-1 296 421 - -
Cone8ag0889 435 FunFam G2/mitotic-specific cyclin 188 295 - -
Cone8ag0889 435 Pfam Cyclin, N-terminal domain 174 300 IPR006671 -
Cone8ag0889 435 Coils Coil 131 151 - -
Cone8ag0889 435 Gene3D - 174 421 - -
Cone8ag0889 435 CDD CYCLIN_AtCycB-like_rpt2 302 419 - -
Cone8ag0889 435 Gene3D - 188 300 - -
Cone8ag0889 435 SMART Cyclin_C_2 302 426 IPR004367 -
Cone8ag0889 435 Pfam Cyclin, C-terminal domain 302 423 IPR004367 -
Cone8ag0889 435 PANTHER CYCLINS 146 413 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone8ag0889 435 SUPERFAMILY Cyclin-like 301 422 IPR036915 -
Cone8ag0889 435 SMART cyclin_7 306 395 IPR013763 -
Cone8ag0889 435 SMART cyclin_7 209 293 IPR013763 -
Cone8ag0889 435 ProSitePatterns Cyclins signature. 204 235 IPR048258 -
Cone8ag0889 435 SUPERFAMILY Cyclin-like 163 299 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0889 Cone-Chr8:8686330 Cone9ag1624 Cone-Chr9:11579755 1.64E-92 dispersed
Cone12ag0860 Cone-Chr12:7712167 Cone8ag0889 Cone-Chr8:8686330 3.59E-39 transposed
Cone12ag0859 Cone-Chr12:7710310 Cone8ag0889 Cone-Chr8:8686330 8.01E-191 wgd
Cone17ag1451 Cone-Chr17:9849759 Cone8ag0889 Cone-Chr8:8686330 5.19E-135 wgd
Cone20ag0025 Cone-Chr20:155965 Cone8ag0889 Cone-Chr8:8686330 5.89E-116 wgd
Cone4ag2018 Cone-Chr4:14050059 Cone8ag0889 Cone-Chr8:8686330 4.18E-136 wgd
Cone6ag1701 Cone-Chr6:12844184 Cone8ag0889 Cone-Chr8:8686330 2.70E-171 wgd
Cone7ag1934 Cone-Chr7:12340108 Cone8ag0889 Cone-Chr8:8686330 2.20E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0889 K21777 - rcu:8268759 519.235