Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0890 ATGGGAGGCGATGGAGATGTGGAAGATGCGAGAGAAGTGAACTCTTGTGACGGAGTCAACGCTGACGCCAACGTTAACATCAATATCCGATGCTCGAGTGGTACGAAGTTTTCCGTGCAGATCAACCTCGATTCTACAGTCGGATCTTTCAAAGCTGTTCTTGCGGAGAAGAGCGATGTTCTGGCCGATCGGCAGCGTCTGATTTACAAGGGCCGGATCTTGAAGGATGATCAGACTTTGGAAAGCTACGGGTTAGAGGCAGACCACACTATCCACTTGGTTCGTGGTTTTGTCCCATCTGCATCAGCCAATACTTCTAGTAGTCCAAATACTACTCCAAGTAATCCAAGAGATGTTGATCCAAATGTGGGTGGGCCATTTGGAGGATCTGGTCTTGGATCTTCTCTATTTCCTGGACTTGGCAGTGAGCTAGGTGGCAGTGATGGTTTATTTGAAGCTGGGCTTCTAGATTTTGAGCAGGTGCAGCAGCAGTTGACTCGAAACCCGAACGTAATGAGAGATTTAATGAACACGCCTGCTGTACAGAGCCTTATGAATAACCCTGATATAATGCGGAACTTAATTATGAATAACCCTCAAATGCGTGAAATCATTGATCGTAACCCTGAGCTTGGGCACATTCTAAATGATCCCAGCACTCTCCGTCAGACTCTTGAAGCTGCAAGAAATCCTGAGCTCATGCGTGAGATGATGCGGAATACTGACAGGGCCATGAGCAACATTGAATCCTCTCCTGAGGGATTTAACATGCTTAGGCGCATGTATGAAACTGTTCAAGAGCCATTTTTAAATGCAACGACAATGGCTGGGAATACTGGAAATGATAACTCAAATCCCTTTGCAGCACTTTTGGGGACCCAAGGTGGGGATCAAACCAATCGATCAACAACTAACTTGGAAACTGGATCTCCTGCTCCTAACACAAATCCACTTCCGAACCCCTGGACCTCTGGTGGGACTGGAGGAACCCAAACAAACACCACAAGGTCAATTCCTACCGGAGATGTTAGGCCACAGGCAACCCCTGGCTTAGCTGGTCTAGGTATTCCAAACTTGGAAGGTATGGCAGGTGCTATGCCAGATCCTGCTATGCTGAATCAGCTGATGCAGAATCCAGCTGTTTCTCAAATGATGCAAAGCCTACTTTCCAACCCTCAGTACATGAACCAGATTCTTGGCCTGAATCCCCAACTGCGCAGCTTGCTTGATTCCAATACTCAATTAAGAGAGATGATGCAAGACCCAGAATTTCTGCGGCAGTTGACATCACCAGATACAATGCAGCAACTGTTAACTTTGCAGCAATCGCTTCTGTCACAGTTAGGTCGGCAACAGACAACCCAGGACCAAAATCAGACTAGTGGAGGTCCAGGATCACCAAACATCCCAAGCATGGAGATGTTAATGAATATGTTTGGTGGACTTGGAGCTGGCAGCCTGGGTGTTCCCAACAGACCTAATGTACCACCGGAAGAGCTCTATGCCACACAGCTCTCACAGCTTCAAGAAATGGGATTTTTCGATACACAAGAGAATATTCGCGCTCTGATTGCTACAGCAGGGAATGTCCATGCTGCAGTCGAGCGATTATTGGGAAATTCCAATTAG 1629 47.08 MGGDGDVEDAREVNSCDGVNADANVNINIRCSSGTKFSVQINLDSTVGSFKAVLAEKSDVLADRQRLIYKGRILKDDQTLESYGLEADHTIHLVRGFVPSASANTSSSPNTTPSNPRDVDPNVGGPFGGSGLGSSLFPGLGSELGGSDGLFEAGLLDFEQVQQQLTRNPNVMRDLMNTPAVQSLMNNPDIMRNLIMNNPQMREIIDRNPELGHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNTGNDNSNPFAALLGTQGGDQTNRSTTNLETGSPAPNTNPLPNPWTSGGTGGTQTNTTRSIPTGDVRPQATPGLAGLGIPNLEGMAGAMPDPAMLNQLMQNPAVSQMMQSLLSNPQYMNQILGLNPQLRSLLDSNTQLREMMQDPEFLRQLTSPDTMQQLLTLQQSLLSQLGRQQTTQDQNQTSGGPGSPNIPSMEMLMNMFGGLGAGSLGVPNRPNVPPEELYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNSN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8693574 8698348 + Conep08aG0091600.1 Cone8ag0890 443439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0890 542 SMART ubq_7 25 96 IPR000626 GO:0005515(InterPro)
Cone8ag0890 542 CDD UBA_PLICs 501 539 - -
Cone8ag0890 542 MobiDBLite consensus disorder prediction 102 127 - -
Cone8ag0890 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 496 540 IPR015940 -
Cone8ag0890 542 Pfam Ubiquitin family 27 94 IPR000626 GO:0005515(InterPro)
Cone8ag0890 542 SUPERFAMILY Ubiquitin-like 20 110 IPR029071 -
Cone8ag0890 542 SUPERFAMILY UBA-like 497 539 IPR009060 GO:0005515(InterPro)
Cone8ag0890 542 CDD Ubl_Dsk2p_like 25 97 - -
Cone8ag0890 542 SMART CBM 148 185 IPR006636 -
Cone8ag0890 542 SMART CBM 198 237 IPR006636 -
Cone8ag0890 542 SMART CBM 402 437 IPR006636 -
Cone8ag0890 542 SMART CBM 368 398 IPR006636 -
Cone8ag0890 542 MobiDBLite consensus disorder prediction 293 342 - -
Cone8ag0890 542 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Cone8ag0890 542 MobiDBLite consensus disorder prediction 448 467 - -
Cone8ag0890 542 ProSiteProfiles Ubiquitin domain profile. 25 94 IPR000626 GO:0005515(InterPro)
Cone8ag0890 542 PANTHER UBIQUILIN 18 539 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cone8ag0890 542 MobiDBLite consensus disorder prediction 293 350 - -
Cone8ag0890 542 Gene3D - 193 251 - -
Cone8ag0890 542 Gene3D - 483 542 - -
Cone8ag0890 542 MobiDBLite consensus disorder prediction 102 118 - -
Cone8ag0890 542 FunFam Ubiquitin domain-containing protein DSK2b 484 542 - -
Cone8ag0890 542 Gene3D - 16 109 - -
Cone8ag0890 542 FunFam Ubiquitin domain-containing protein DSK2b 22 109 - -
Cone8ag0890 542 Pfam UBA/TS-N domain 501 537 IPR015940 -
Cone8ag0890 542 SMART uba_6 501 539 IPR015940 -
Cone8ag0890 542 MobiDBLite consensus disorder prediction 448 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0890 K04523 - - csv:101203166 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0861 Cone-Chr12:7716464 Cone8ag0890 Cone-Chr8:8693574 1.36E-278 wgd
Cone12ag1271 Cone-Chr12:9734072 Cone8ag0890 Cone-Chr8:8693574 2.06E-133 wgd
Cone8ag0890 Cone-Chr8:8693574 Cone8ag1325 Cone-Chr8:10728073 4.24E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0890 Cone12ag0861 . . . . . . . . . . . . . . . . . Cma16g01271 . . . . . . . . . . . . . . . . . . . Lsi07g01060 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39