Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0892 ATGGGTCTTTGCTTGGGATATCTTGCTCATAATTCTGATCCAAGTTCTAGTATTGGAGCTTCTACTGAAGGGAGTTTTATCAATCACAAAAATGGATTTCTGGGGGGGAGCAAATCCGGTCGAAGTTTTCGGGACTCGGGAAGTTTGGAAGGGTCAAGTAGAAAAGGAGAAATCTTACAGACACCCAATTTGAAGGTGTTTACTTTTGCTGAGCTGAAACTTGCAGCTAAGAATTTCAAATCTGAGACATTGCTCGGTGAAGGAGGGTTCGGAAAAGTTTATAAGGGCTGGATTGATTTGAAGACACTTTCTCCTTCTGATGAGTCTGACAATGAACATGCGGTTGCTATCAAGAAACTAAACCCAGAAAGGGATCAAGGTTTTGAAGAGTGGCAGTCAGAGGTGAACTTTCTAGGAAGGCTTTCTCATCCTAATATTGTCAGGTTATTGGGCTACTGTTGGGAGAATAAAGATCTGCTTCTTGTCTATGAATTCATGTCCAAGGGAAGCGTGGAGAATCATCTTTTTAGAAGAAATCCTTCCAGTCGATTGCTTACTTGGGAAATTCGTCTCAAAGTAGCAATGGGAGCCGCTCAGGGATTAGCCTTCTTGCATACATCAGAGAAACAAGTTATATATAGAGATTTCAAGGCCTCAAATATCCTTCTTGACGCGGACTACAATGCGAAAATATCGGATTTCGGGTTAGCAAAATTTGGCCCTTCCATCGGAAACTCACATGTAACAACCAAAATCATGGGTACCTTTGGGTATGCGGCCCCCGAATACCTTTCTACAGGCCGTTTGTATGTAAAGAGTGACGTGTATGGATTCGGGGTAGTGCTGCTGGAATTGTTGACTGGAATGAGGGCGTTTGATTCAAAAAGGGTTGGAGAAAATCACAACCTAGTTCAGTGGGCAAAACCGATTTTGAAGAAAAGCAAGCTTTCAACTATTATGGATGCTCGGATAAATGGTCAATACTCCAAGAAGGCATCTTTTTTGGCAGGAGAGCTTGCTTTGAAATGCCTCGAATTGGAGCCTGATAATCGCCCTTCCATGAAACAAGTCATCCGGGCTTTGGAACGGATCAAAGCAATTGAGTTGAAGTAA 1113 42.59 MGLCLGYLAHNSDPSSSIGASTEGSFINHKNGFLGGSKSGRSFRDSGSLEGSSRKGEILQTPNLKVFTFAELKLAAKNFKSETLLGEGGFGKVYKGWIDLKTLSPSDESDNEHAVAIKKLNPERDQGFEEWQSEVNFLGRLSHPNIVRLLGYCWENKDLLLVYEFMSKGSVENHLFRRNPSSRLLTWEIRLKVAMGAAQGLAFLHTSEKQVIYRDFKASNILLDADYNAKISDFGLAKFGPSIGNSHVTTKIMGTFGYAAPEYLSTGRLYVKSDVYGFGVVLLELLTGMRAFDSKRVGENHNLVQWAKPILKKSKLSTIMDARINGQYSKKASFLAGELALKCLELEPDNRPSMKQVIRALERIKAIELK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8700114 8702470 - Conep08aG0091800.1 Cone8ag0892 443441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0892 370 Pfam Protein tyrosine and serine/threonine kinase 82 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0892 370 CDD STKc_IRAK 85 364 - -
Cone8ag0892 370 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Cone8ag0892 370 Gene3D Transferase(Phosphotransferase) domain 1 166 369 - -
Cone8ag0892 370 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 166 370 - -
Cone8ag0892 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0892 370 ProSiteProfiles Protein kinase domain profile. 79 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0892 370 PANTHER OS01G0588500 PROTEIN-RELATED 55 365 IPR050823 -
Cone8ag0892 370 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524(InterPro)
Cone8ag0892 370 FunFam Serine/threonine-protein kinase BIK1 46 165 - -
Cone8ag0892 370 SUPERFAMILY Protein kinase-like (PK-like) 63 359 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0892 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1697 Cone-Chr6:12817405 Cone8ag0892 Cone-Chr8:8700114 1.64E-155 dispersed
Cone8ag0892 Cone-Chr8:8700114 Cone9ag1621 Cone-Chr9:11559669 3.68E-164 dispersed
Cone12ag0863 Cone-Chr12:7728467 Cone8ag0892 Cone-Chr8:8700114 3.07E-91 transposed
Cone12ag0862 Cone-Chr12:7722427 Cone8ag0892 Cone-Chr8:8700114 6.77E-43 wgd
Cone12ag1276 Cone-Chr12:9756176 Cone8ag0892 Cone-Chr8:8700114 3.30E-141 wgd
Cone17ag1455 Cone-Chr17:9881338 Cone8ag0892 Cone-Chr8:8700114 5.62E-132 wgd
Cone20ag0022 Cone-Chr20:141578 Cone8ag0892 Cone-Chr8:8700114 2.09E-135 wgd
Cone8ag0892 Cone-Chr8:8700114 Cone8ag1330 Cone-Chr8:10751564 3.00E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83124 PF02902 Peptidase_C48 1.50E-16 CL0125 Cone PK