Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0893 ATGGCAATGGAGGAAACTTGCAAAGGGAATAATACTACTAATTCTCATCGGCTGAGAAATTCGCCTCTACTTGATTTGGACCTCAATTTTCTTCCTTCCTCAGATGATATGTCTGAAGATTCTGAGGATCAACGGAACGAATCCGTCACGTTACCAGGTGGAGATGTAGGTGTGATAGAGAATAAGAAAAAGAGGGCAGGAAAAGAACACATTGCAAAAATTGAATTATCGGATCTTGCCAAGTATTTTGACGTGCCTATTATCGAGGCTTCAAGAAGTCTCAATGTTGGGCTAACTGTATTGAAAAGGAAATGCAGAGAATTAGGCATTCCTCGTTGGCCTCACAGGAAGATCAAATCCCTTGACGGTTTAATCCGTGATCTACAGGAAGAGGCGAAACAGCAAGAGCAGGATGACAAGGCAGCTGTTGCTGTGGCAAAGAGAAAGAAGATATTGGAGAGTGAAAAGGCGAGGATTGAGAGGACACCCATCATTGACTTACAGATTGAGACCAAGAAATTCAGACAAGATGTTTTCAAGAGAAGGTATAGGGCTAGAGCTCTTAGAAATCAGGGCATATCCATTTCTAGTTAG 594 42.09 MAMEETCKGNNTTNSHRLRNSPLLDLDLNFLPSSDDMSEDSEDQRNESVTLPGGDVGVIENKKKRAGKEHIAKIELSDLAKYFDVPIIEASRSLNVGLTVLKRKCRELGIPRWPHRKIKSLDGLIRDLQEEAKQQEQDDKAAVAVAKRKKILESEKARIERTPIIDLQIETKKFRQDVFKRRYRARALRNQGISISS 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8705777 8708598 - Conep08aG0091900.1 Cone8ag0893 443442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0893 197 Pfam RWP-RK domain 73 121 IPR003035 -
Cone8ag0893 197 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag0893 197 PANTHER PROTEIN RKD4 49 191 IPR044607 GO:0003700(InterPro)
Cone8ag0893 197 MobiDBLite consensus disorder prediction 34 56 - -
Cone8ag0893 197 Coils Coil 118 138 - -
Cone8ag0893 197 ProSiteProfiles RWP-RK domain profile. 56 141 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0893 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0843 Cone-Chr2:34429850 Cone8ag0893 Cone-Chr8:8705777 2.47E-23 dispersed
Cone14ag0006 Cone-Chr14:49551 Cone8ag0893 Cone-Chr8:8705777 6.35E-19 transposed
Cone12ag0864 Cone-Chr12:7730896 Cone8ag0893 Cone-Chr8:8705777 4.19E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1190 . . . . . . . . . . Cma03g00624 . Car03g00579 . . . . . . . . . . . . . . . . . . Cone8ag0893 Cone12ag0864 . . . . . . . . . . . . . . . Cmo03g00652 . . . . . . . . . . . . . . . . . . . . . . Csa06g03401 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone2ag0843 . 149 263 AtRKD Transcription Factor Family AT1G18790 73.0 2.1e-39 160.2
Cone2ag0843 . 152 263 AtRKD Transcription Factor Family AT1G74480 70.5 1.5e-38 157.5
Cone8ag0893 . 23 197 AtRKD Transcription Factor Family AT4G35590 51.4 2.1e-38 157.1
Cone12ag0864 . 23 197 AtRKD Transcription Factor Family AT4G35590 50.8 4.6e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46691 PF01966 HD 3.60E-12 CL0237 Cone TF