Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0894 ATGAGCGACGCCGTTTTATACCCTCCAATTGATCTCACCAGCTTCGATCTAATTGTTGTCGGGACAGGCCTATCGGAATCCATTTTGGCCGCAGCAGCCGCGGGTATTGGTAAAACAGTTCTCCACGTTGATCCGAATTCCTTCTATGGCTCTCATTTTGCTTCCCTCCCACTTCACGATCTTACCTACTTTCTCAATTCGCAATCTACTCCTCCACCACCGCCGGCGGCGTCCCCCTCCGTCGATGAAATCGATTACGTCGCTATAGACCTCAGCTCCTGGTCATTTTATTCGGACGTGGAGGTCTCCTCCTACGCGCCTGAGATTCTCGAAGAACATTCCAGAAAGTTCAACATCGATTTGGCCGGACCGAGGGTTCTGTTTTGTGCCGATAAATGCATCGACTTGGTTTTGAAATCTGGAGCGAATCAGTACCTGGAGTTCAAGTGCATCGATGCGACCTACGTTTGCGATAAGAATGGGATATTAGCTAGTGTGCCGGACTCTCGAGCTGCGATTTTTAAGGATAAGAGTTTGAGCTTGACGGAGAAGAATCAGTTGATGAGATTCTTCAAGCTGGTTCAGCAGCACTTGAATCCGAGCGAGGACGTGGAAAATTCCAAGATCTCTGACGAGGATTTGGATAGCCTCTTCGTTGATTTCTTGAAGAAGATGCGATTGCCGCCAAAGATAAAATCGATCGTGCTATATGCTATATCAATGGCGGATTATGATCAAGATGATACAGAGGCTTGTAAAGCCACAATCCTGACAAGAGAGGGGATAGATCGTCTAGCTCTTTACCACTCATCAGTTGGGAGATTCCCTAATGCACCTGGAGCTTTGATTTATCCTCTTTATGGTCAAGGGGAACTGCCTCAAGCATTTTGCCGTCGTGCTGCTGTTAAAGGTTGTCTCTACGTATTGCGCATGCCAGTGATTGCACTGCTTACAGACAAGAGTAATGAGAACTATAAGGGTGTTAGATTAGCTTCGGGTCAGGATATATTCAGTCATCAATTGGTATTGGATCCATCATTCACAGTTTCTTTGCCATCAGCTTCATCTCCATTGAATTCTTTTAAAGAAAACCTTGTTGGTTTAAACTCGAGAGAAGTTAAAGGCAAGGTGGCCAGGGGAATATGCATTACAAGGCATTCTCTTATACCAGATGTAATGAATTGTCTGGTGGTGTATCCTCCCAGAACTTTGTTCCCTGAGCAGGTCACATCAGTTCGAGTTCTCCAGCTAGGTGGAAATTTAGCTGTTTGTCCTTCGGGCATGCACTTTGCGCAAGGCTGGAAACAAGTTTGTGAATTATAA 1323 45.73 MSDAVLYPPIDLTSFDLIVVGTGLSESILAAAAAGIGKTVLHVDPNSFYGSHFASLPLHDLTYFLNSQSTPPPPPAASPSVDEIDYVAIDLSSWSFYSDVEVSSYAPEILEEHSRKFNIDLAGPRVLFCADKCIDLVLKSGANQYLEFKCIDATYVCDKNGILASVPDSRAAIFKDKSLSLTEKNQLMRFFKLVQQHLNPSEDVENSKISDEDLDSLFVDFLKKMRLPPKIKSIVLYAISMADYDQDDTEACKATILTREGIDRLALYHSSVGRFPNAPGALIYPLYGQGELPQAFCRRAAVKGCLYVLRMPVIALLTDKSNENYKGVRLASGQDIFSHQLVLDPSFTVSLPSASSPLNSFKENLVGLNSREVKGKVARGICITRHSLIPDVMNCLVVYPPRTLFPEQVTSVRVLQLGGNLAVCPSGMHFAQGWKQVCEL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8708985 8713355 - Conep08aG0092000.1 Cone8ag0894 443443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0894 440 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 166 281 - -
Cone8ag0894 440 SUPERFAMILY FAD-linked reductases, C-terminal domain 374 430 - -
Cone8ag0894 440 PANTHER RAB GDP-DISSOCIATION INHIBITOR 13 431 IPR018203 GO:0005092(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005829(PANTHER)|GO:0005968(PANTHER)|GO:0007264(InterPro)|GO:0016192(PANTHER)|GO:0018344(PANTHER)
Cone8ag0894 440 Pfam GDP dissociation inhibitor 112 349 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 Pfam GDP dissociation inhibitor 14 68 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 SUPERFAMILY FAD/NAD(P)-binding domain 14 350 IPR036188 -
Cone8ag0894 440 PIRSF Rab_ger_ger_transf_A_euk 96 432 IPR001738 GO:0005968(InterPro)|GO:0006886(InterPro)|GO:0018344(InterPro)
Cone8ag0894 440 PIRSF Rab_ger_ger_transf_A_euk 1 106 IPR001738 GO:0005968(InterPro)|GO:0006886(InterPro)|GO:0018344(InterPro)
Cone8ag0894 440 PRINTS Rab GDI/REP protein family signature 288 309 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 PRINTS Rab GDI/REP protein family signature 183 198 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 PRINTS Rab GDI/REP protein family signature 133 149 IPR018203 GO:0005092(InterPro)|GO:0007264(InterPro)
Cone8ag0894 440 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 89 430 - -
Cone8ag0894 440 FunFam Rab proteins geranylgeranyltransferase component 166 281 - -
Cone8ag0894 440 Gene3D - 13 374 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0894 K23460 - - csv:101204555 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0894 Cone-Chr8:8708985 Cone8ag1022 Cone-Chr8:9489802 2.16E-24 dispersed
Cone12ag0865 Cone-Chr12:7732220 Cone8ag0894 Cone-Chr8:8708985 4.97E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32