Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0895 ATGGGAGAGGAAGAAAGCATTGAGAATCGAAGCTCGGTTGCTGCTCCTCTGATCTTTCTGATTATTATTGTTTTCCAGTTTCTATCCAGGTGGCTTGGAATCTTGAAGAAAGGTATAAAGAGTGAGACGGAAATCCAGTTGCAAGGAGAAATAAGACAACTGCTGAAGGAAGCCAGCACCTTGTCTCAGCCATCAACATTTGCACAAGCTGCAAAACTTAGGAGGATGGCGGCTGCTAAGGAAAAGGAGCTCGCAAATTATCAAGAAGTGCAGGGCAAGGACATAACGTTGTCATATGATATGTATCAAAAAGCTTTACTTATAACTAAGGTTTTAGTATACTTTGCGCTGATTTGCTGGTTTTGGAGGGTTCCTGTCACCATCATATCTCAGCAGCTTGTGCAACCCTTTGGAAGGGTGTTGTCTTGGAAAGCCGGAGGTATCAGAAATGACAATGTAATGGTTGGTATTATACCATGGTTGATTATCTCATCAAGGGTTAGCAAATTCTTGTGTCGACTCTTCAAGCAAAGCTTGATGAATGGGGTGAAGAAGAGTAGTAGTAGCCGAGATTTTTCCGTGTGGGGTTGCCTTGAAGTAACAGTCTCAAGTCTCTCATCACAAAAGGGCTTCTATCTCCTTCCTCTTCCTGCGTTTCTTTCGGTGGATTTTGTTGTTAAATCTTCTCCGTCCCTCTATGTTTTGAGCATTTCACCTTCGAACCCTAGCGACGTTCGATTCGAATCGCTAGAGAACTCTGCAGTAATCATGTCCGGATCCAGAGGGCAAATGTTGGGAGGCGGGGGGGTATCTGATGGGTACGAGGTCGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCCTACTTCGCAGTTAGCAGCAGCAACAGCGGCGCAACTGGCTTCCAACCTTACGGCTACCATGGTGGTTTCCAACAACCTCCTTCCTTTCCAGTGGTCCGCCTCAGAGGACTCCCCTTTGATTGCAGCAATCTTGAGATCTTCAAATTCTTTGCAGGACTAGACATAGTAGACATCCTTCTAGTCAACAAGAATGGACGATTTTCGGGTGAGGCCTTTGTTGTTTTTGCGGGCCCCATGCAGGTTGAATGTGCCGTACAGAGAGACAGAAGGAACATGGGCCGAAGGTATGTAGAAGTCTTCAGGTGCAAGAGGCAGGATTATTACAACGCAGTTGCTGCTGAAGTGAACTATGAGGGTATTTACGACAATGACTACCATGGAAGCCCGCCTCCAGCCCGAGCAAAGAGGTCTAGTGACAAGGACCAGTTGGAATACACTGAGATATTGAAGATGCGTGGTCTGCCATTTTCTGTGAAGAAGTCTCAGATAATGGAGTTTTTCGGAGAGTTTAGTCCGATTGAAGAGAGGATTTATATTGCGTGTCGTCCGGATGGTAAGGCTACAGGGGAGGCTTATGTGGAGTTTGCTTCTGCTGATGAGGCAAAGAGGGCGATGTGTAAGGATAAGATGATGATTGGGTCGAGGTATGTTGAGCTGTTTCCTTCCACCACAGATGAAGCTAGACGAGCCGAGTCTAGGTCCAGGCAGTGA 1575 46.22 MGEEESIENRSSVAAPLIFLIIIVFQFLSRWLGILKKGIKSETEIQLQGEIRQLLKEASTLSQPSTFAQAAKLRRMAAAKEKELANYQEVQGKDITLSYDMYQKALLITKVLVYFALICWFWRVPVTIISQQLVQPFGRVLSWKAGGIRNDNVMVGIIPWLIISSRVSKFLCRLFKQSLMNGVKKSSSSRDFSVWGCLEVTVSSLSSQKGFYLLPLPAFLSVDFVVKSSPSLYVLSISPSNPSDVRFESLENSAVIMSGSRGQMLGGGGVSDGYEVGSKRQRMMESNPYFAVSSSNSGATGFQPYGYHGGFQQPPSFPVVRLRGLPFDCSNLEIFKFFAGLDIVDILLVNKNGRFSGEAFVVFAGPMQVECAVQRDRRNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPARAKRSSDKDQLEYTEILKMRGLPFSVKKSQIMEFFGEFSPIEERIYIACRPDGKATGEAYVEFASADEAKRAMCKDKMMIGSRYVELFPSTTDEARRAESRSRQ 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8713993 8720264 - Conep08aG0092100.1 Cone8ag0895 443444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0895 524 Coils Coil 70 90 - -
Cone8ag0895 524 Pfam CHD5-like protein 40 162 IPR028945 GO:0071816(InterPro)
Cone8ag0895 524 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 279 523 IPR050666 GO:1990904(PANTHER)
Cone8ag0895 524 Pfam RNA recognition motif 321 381 IPR000504 GO:0003723(InterPro)
Cone8ag0895 524 Pfam RNA recognition motif 439 504 IPR000504 GO:0003723(InterPro)
Cone8ag0895 524 CDD RRM_hnRNPH_ESRPs_RBM12_like 436 508 - -
Cone8ag0895 524 SUPERFAMILY RNA-binding domain, RBD 435 521 IPR035979 GO:0003676(InterPro)
Cone8ag0895 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 435 512 IPR000504 GO:0003723(InterPro)
Cone8ag0895 524 SMART rrm1_1 319 388 IPR000504 GO:0003723(InterPro)
Cone8ag0895 524 SMART rrm1_1 436 508 IPR000504 GO:0003723(InterPro)
Cone8ag0895 524 Gene3D - 308 404 IPR012677 -
Cone8ag0895 524 Gene3D - 419 524 IPR012677 -
Cone8ag0895 524 CDD RRM_hnRNPH_ESRPs_RBM12_like 319 388 - -
Cone8ag0895 524 SUPERFAMILY RNA-binding domain, RBD 308 397 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0895 K12898 - - cit:102629250 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0449 Cone-Chr1:4105132 Cone8ag0895 Cone-Chr8:8713993 3.66E-48 dispersed
Cone12ag0867 Cone-Chr12:7741036 Cone8ag0895 Cone-Chr8:8713993 1.19E-104 transposed
Cone12ag0866 Cone-Chr12:7738271 Cone8ag0895 Cone-Chr8:8713993 3.12E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1194 . . . . Bpe15g00371 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0895 Cone12ag0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39