Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0896 ATGAAGGGAGGTAAATCGAAGGCTACCACAAGAAAGTCGGATACTAAGCTAAAGACGAAAAGTGCAGGAGCAGCTAAGAAAGGAAAAGCTGCCAAGGATCCGAATAAGCCAAAGAGACCTGCTAGCGCTTTCTTTGTTTTCATGGAGGAGTTCAGGAAGACGTACAAGAAAGATCATCCTAATAACAAATCCGTCGCCGCTGTTGGAAAAGCTGGTGGGGACAAATGGAAATCAATGTCAGAATCTGAAAAAGCTCCTTTTGTAGCTAGGGCTGAGAAAAGGAAGGCAGAGTACAACAAGAACATGCAGGCTTACAATAAGAGGATCGCTGAAGGAGGTAATGGAGCTGATGAAGATGAGTCTGACAAGTCAAAGTCTGAAGTGAATGATGAGGATGAAGAAGCCGATGAAAGTGGAGAGGAGGAAGAAGATGATGAGTAG 441 44.22 MKGGKSKATTRKSDTKLKTKSAGAAKKGKAAKDPNKPKRPASAFFVFMEEFRKTYKKDHPNNKSVAAVGKAGGDKWKSMSESEKAPFVARAEKRKAEYNKNMQAYNKRIAEGGNGADEDESDKSKSEVNDEDEEADESGEEEEDDE 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8722294 8723979 + Conep08aG0092200.1 Cone8ag0896 443445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0896 146 CDD HMG-box_AtHMGB1-like 38 98 - -
Cone8ag0896 146 FunFam High mobility group B1 22 109 - -
Cone8ag0896 146 Gene3D High mobility group box domain 20 114 IPR036910 -
Cone8ag0896 146 MobiDBLite consensus disorder prediction 102 146 - -
Cone8ag0896 146 SUPERFAMILY HMG-box 28 109 IPR036910 -
Cone8ag0896 146 MobiDBLite consensus disorder prediction 1 41 - -
Cone8ag0896 146 MobiDBLite consensus disorder prediction 7 36 - -
Cone8ag0896 146 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Cone8ag0896 146 SMART hmgende2 36 107 IPR009071 -
Cone8ag0896 146 Coils Coil 88 108 - -
Cone8ag0896 146 MobiDBLite consensus disorder prediction 124 146 - -
Cone8ag0896 146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Cone8ag0896 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 136 IPR031061 -
Cone8ag0896 146 MobiDBLite consensus disorder prediction 55 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0896 K25507 - - csv:101203658 203.756
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0841 Cone-Chr6:4298018 Cone8ag0896 Cone-Chr8:8722294 6.24E-09 dispersed
Cone12ag0868 Cone-Chr12:7749914 Cone8ag0896 Cone-Chr8:8722294 1.38E-73 wgd
Cone17ag1458 Cone-Chr17:9894432 Cone8ag0896 Cone-Chr8:8722294 3.70E-44 wgd
Cone20ag0017 Cone-Chr20:128072 Cone8ag0896 Cone-Chr8:8722294 8.70E-13 wgd
Cone4ag2024 Cone-Chr4:14068094 Cone8ag0896 Cone-Chr8:8722294 1.57E-45 wgd
Cone7ag1941 Cone-Chr7:12386493 Cone8ag0896 Cone-Chr8:8722294 5.35E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1195 . . Bda04g00215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0896 Cone12ag0868 . . . . . . Blo05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46692 None None None None Cone TR