Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0900 ATGGCCAAGAAAGTTTTCACTCCTGAGAGACATATTAGCGGCGTGGAAACCCCTCGAAATAGGTTGGAGCTGCAAATAGAAGCTTCGCAAAGATATTTTGCTTCAAGAGAACTACCGTACATCTATCAAGTTGAAGAGGGGCACTCTGAGAAGGTTTCTTATCCAAATGAGGCTTCAATGAAGAAGTTGATCGAGGAAGAAATGTCAAAGCATTCAAACACCAGACCCATTGCTCCAAGCATTGTTGCTCGGTTGATGGGAATGGATATGATACCATCAGATACAAACTCAGCAATTCAGCGAAGAGAAACAGACAATGATAGCGCAGGAGTGAAGTATTCAAAGAAAGAACGGAATGGAAGGCACTTAGACGATCAAGTCTCTTCCAAATCAAATTCCTCCAGCCGAATAGAACTCCACCCATCGTTCCATGATATGGAGAAGGATGCTGATGGATGGAGCAGCAATCAGAAGATGGGAAAACCAAAACGGCGAGAACATCCTCAAGAGGAGGAATTACAAAAGTTCAAAAAGGAATTTGAAGCATGGCAAGCAGATAGGTTTAGGGAAAGTTCTAGGGTTATTGATCATGGAAGCATTGATAGACAGTTGCTGGCTCAAGAGAATCTCAACAAGGAAAAGATGGTACTCCATGCATATTCAGGGAGAATACCAACTAGGAGGCCTTTAGACCCTAAGGGTGAAAGATCTTCAGCTCTGCAATTTCATGGTAATAAAATGTCATTATCCCCAACTGAACAGGAAAAATCTATTTCTATCAGAAACAAAACAATAGAAAGTAATCATGAGCATCCCTACTTGATATCTCATAATGCCTTGGATAAATCCTCAGATCCTACAAAGATAGTAATACTGAAGCCCGGTCCTGAGAGAATATACAGGCATGACGAGCAACCTACAAGTTCCTCTGGCACTTCAGAGGAGAGAGCTAGTATAGAAGACTTTCTTAAGGAGGTAAAGGAGCGACTGAAGTGTGAAGTGCAGGGGAAAACGGTTAAGAGGGGTCCTACAGTCAGAGGAAGAGGAATTGAGACCCCTTTCAGTGAAAGGATGTCTGATCCTAAGCAAATTGCCCAGCAAATAGCAAAACAGGTCAGAGAAAGCGCATCTAGAGAGGTTGGAACTAATTTTCTTCGATCGGAATCAACCAGATCATCTAGAAGTGAAATTCAGTTCATGGGACCAAGTTCTCCTGAGTACATAAACAGAGATTCTAGAAGATTCCTGTCAGAGAGGCTAAGAAATGTTAAAACAAGAGAAACTGACGCTGATCATGAAATAACACTACAAACTAGAGATACTAATAAGGCTAGAAAACAGATAAATGACTCGGAAATTGTAAGAGATGTGGAAGAAATGCAAACAAGAATTTTTAGGCATGGGTCGGATGATCATAATGTGGTTCATAGAGAATTGTCACCTGGGAACCTTGTTAGGTCTTTATCTGCTCCAGTATCAGGTACTTCATTTGGGAAGCTTCTTCTAGAAGACCGCCACATTTTAACTGGAGCACACATTCAGAGAAAGCATGAGGCTATTGAAATCGTGTCGGTTAATATGAAAAGGCAGAAGAAAGAAAAGTTCAATTTCAAAGAAAAAGTTTCCAATTTCAGATATAATCTCACTCTTAGGGGGAGGTTGTTTGGTAGAAAGGCTAAATCTATGGAGGGATTGCCTGGCTCTGAAGACTATCATATGAAGGACATGTTAAGTGGACCTACAGTCATGATGAACATGGGAGAGAGACATGTGAAGGAGAATTTCACTGAGGTGCCTCCTAGTCCTGCTTCTGTATGCAGCAGTGCACAAGAAGAATTCTGGAAGTCAGCTGATCATCTCAGCCAGATATCAACATCAGATGTAACTCCTGCAGATGACAATGGGGTGCCCCGTGCTTTCCGAGAGATCAGCTCTCACCTCAGTGCATTGCAAAGGCAACTGAATCAACTCGAGTCTAATGATTTTGAGGAGAAAAAAACAAGACGAGTCCCTATTGAGCATGAAATCATAGAGGTCAAGGATCCAGCAGAAGCCTTCATAAGAGACCTTCTTGTTGCTTCCGGATTATATGATGGATCATCCGATAAGTTTCTATCTAGATGGAACACACTCGCAAAGCCTATAAGCAGTTCAGTTTTTGAAGAAGTGCAAGAATCTTATAGAAAATTAGAGGGAAATGAAATTTCTTCAAAAAATCAGAATGAGAATGTCAATCATATGGCATTGCTCGATCTATTGAACGAAGCACTATCAACTGTTTCTGGACCGCCTTTAACAAGGTCTAGACTCAGAAGAGACATTACTACTAACTCATCGGCTCCACCACCATTGCTCGGAAGGAAATTGTTGGATTCTGTTTGGGGTATGATCCGAGTTTATTTATATCCTCCAAGTGATAGATCTTTCTACTCGCTTGATGACATGATGGCTCGAGATTTAAGCTCAATGCCCTGGTCATCTATGATTGATGACGAAACAAACGGGATCGGAAAGGATATGGGAAGTTTGATTTTTCGGGATCTGGTCAATGAAGTTCTGAATGATTTTCATTTATAG 2577 41.25 MAKKVFTPERHISGVETPRNRLELQIEASQRYFASRELPYIYQVEEGHSEKVSYPNEASMKKLIEEEMSKHSNTRPIAPSIVARLMGMDMIPSDTNSAIQRRETDNDSAGVKYSKKERNGRHLDDQVSSKSNSSSRIELHPSFHDMEKDADGWSSNQKMGKPKRREHPQEEELQKFKKEFEAWQADRFRESSRVIDHGSIDRQLLAQENLNKEKMVLHAYSGRIPTRRPLDPKGERSSALQFHGNKMSLSPTEQEKSISIRNKTIESNHEHPYLISHNALDKSSDPTKIVILKPGPERIYRHDEQPTSSSGTSEERASIEDFLKEVKERLKCEVQGKTVKRGPTVRGRGIETPFSERMSDPKQIAQQIAKQVRESASREVGTNFLRSESTRSSRSEIQFMGPSSPEYINRDSRRFLSERLRNVKTRETDADHEITLQTRDTNKARKQINDSEIVRDVEEMQTRIFRHGSDDHNVVHRELSPGNLVRSLSAPVSGTSFGKLLLEDRHILTGAHIQRKHEAIEIVSVNMKRQKKEKFNFKEKVSNFRYNLTLRGRLFGRKAKSMEGLPGSEDYHMKDMLSGPTVMMNMGERHVKENFTEVPPSPASVCSSAQEEFWKSADHLSQISTSDVTPADDNGVPRAFREISSHLSALQRQLNQLESNDFEEKKTRRVPIEHEIIEVKDPAEAFIRDLLVASGLYDGSSDKFLSRWNTLAKPISSSVFEEVQESYRKLEGNEISSKNQNENVNHMALLDLLNEALSTVSGPPLTRSRLRRDITTNSSAPPPLLGRKLLDSVWGMIRVYLYPPSDRSFYSLDDMMARDLSSMPWSSMIDDETNGIGKDMGSLIFRDLVNEVLNDFHL 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8741647 8746533 + Conep08aG0092600.1 Cone8ag0900 443449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0900 858 Pfam Domain of unknown function (DUF4378) 685 851 IPR025486 -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 296 318 - -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 140 171 - -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 385 408 - -
Cone8ag0900 858 Coils Coil 640 660 - -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 342 361 - -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 105 125 - -
Cone8ag0900 858 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 855 - -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 95 171 - -
Cone8ag0900 858 Pfam DUF761-associated sequence motif 78 94 IPR032795 -
Cone8ag0900 858 MobiDBLite consensus disorder prediction 385 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0900 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0871 Cone-Chr12:7768604 Cone8ag0900 Cone-Chr8:8741647 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1198 Blo04g00861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0900 Cone12ag0871 . . . . . . . . Bda11g01810 . . . Bma03g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008231 2 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 35