Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0907 ATGGTGTCAGGAACTGATATTTCAACGCAGGTAACGAGTTTGGAAGGCGGGTGTTTTAAGGGCAGTGCAGGGCCTTCAATGGCGGACCAGAATAGTCATGATAAAAATAATAATAACAATACCAATAATAATAACAATGAAGATTCAATGGGCGGTTTAAATCATGCTAATAATATCGGGAAGCCCCCTCGAAACATATCGGCTATGCGCCATTGTAGCAGCTCTGCATGGTTGCCAGAACCGGAACCCGATGTTGGTATTAACTTCAAGTCACCATCAGATGAGAAATCCGAGTTTGAACCTATATTTCGTTCGGGAAGCTGTTCAGACAAAGGACCAAAACAATACATGGAAGATGAGTTTGTATGTGTAGACAGTCTTCAAGAACATCTCAGCTCAACTCAAAACTTCCCTTCTTTCGGGGCATTTTATGGGGTTTTTGATGGACATGGTGGTACTGATGCAGCATCTTTCACGAGAAAGAACATCCTTAAATTTATTGTTGAAGATTCTTACTTCCCCTCAGGCATGAAGAAGGCGATCAAGAGTGCTTTTGTGAAGGCCGATCATGCATTAGCTGATACTAGCTCTCTCGATAAATCCTCTGGCACCACCGCTTTGACTGCCCTTATTTTCGGAAGGACAATGCTAATTGCTAACGCAGGGGATTCGAGAGCCGTGATGGGGAAACGTGGAAGAGCAGTAGAGCTCTCCAAAGACCACAAACCCAACTGCACCTCAGAGAGACTAAGAATTGAGAAACTAGGAGGCGTCATTTACGACGGATACCTAAACGGCCAACTATCTGTTGCACGTGCCCTTGGAGACTGGCACATCAAGGGCTCTAAGGGTTCCAATTGCCCCTTGAGCTCTGAGCCGGAGCTAGAAGAGATCCTATTAACCGAAGAAGATGAGTTCTTGATAATGGGTTGTGATGGTTTATGGGATGTGATGAGTAGCCAATGTGCCGTTACTATGGTCAGGAAGGAACTCATGCAGCATAATGACCCGGAAAGGTGTTCTAAGGCTTTGGTCAAGGAGGCACTTCAGAGGAACAGTTGTGACAATATGACGGTTGTGGTTGTTTGTTTCTCGAATGATCCACCACCTAAGATTCAGATCCCCAAATCGCATAAGAGGCGGAGCATTTCGGCTGAGGGGTTGGATCATCTCAAGGGACTCTTGAATAGTTTTTGA 1197 45.11 MVSGTDISTQVTSLEGGCFKGSAGPSMADQNSHDKNNNNNTNNNNNEDSMGGLNHANNIGKPPRNISAMRHCSSSAWLPEPEPDVGINFKSPSDEKSEFEPIFRSGSCSDKGPKQYMEDEFVCVDSLQEHLSSTQNFPSFGAFYGVFDGHGGTDAASFTRKNILKFIVEDSYFPSGMKKAIKSAFVKADHALADTSSLDKSSGTTALTALIFGRTMLIANAGDSRAVMGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSNCPLSSEPELEEILLTEEDEFLIMGCDGLWDVMSSQCAVTMVRKELMQHNDPERCSKALVKEALQRNSCDNMTVVVVCFSNDPPPKIQIPKSHKRRSISAEGLDHLKGLLNSF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8797371 8800447 - Conep08aG0093300.1 Cone8ag0907 443456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0907 398 Gene3D - 87 368 IPR036457 -
Cone8ag0907 398 FunFam Probable protein phosphatase 2C 22 90 367 - -
Cone8ag0907 398 MobiDBLite consensus disorder prediction 15 66 - -
Cone8ag0907 398 Pfam Protein phosphatase 2C 106 357 IPR001932 -
Cone8ag0907 398 CDD PP2Cc 103 364 IPR001932 -
Cone8ag0907 398 SUPERFAMILY PP2C-like 98 366 IPR036457 -
Cone8ag0907 398 ProSiteProfiles PPM-type phosphatase domain profile. 104 364 IPR001932 -
Cone8ag0907 398 SMART PP2C_4 94 362 IPR001932 -
Cone8ag0907 398 PANTHER PROTEIN PHOSPHATASE 2C 65 364 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone8ag0907 398 ProSitePatterns PPM-type phosphatase domain signature. 143 151 IPR000222 GO:0043169(InterPro)
Cone8ag0907 398 MobiDBLite consensus disorder prediction 25 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0656 Cone-Chr20:3995828 Cone8ag0907 Cone-Chr8:8797371 1.21E-115 dispersed
Cone20ag1024 Cone-Chr20:7163667 Cone8ag0907 Cone-Chr8:8797371 1.03E-97 dispersed
Cone20ag1132 Cone-Chr20:7728195 Cone8ag0907 Cone-Chr8:8797371 2.61E-39 dispersed
Cone4ag2029 Cone-Chr4:14086911 Cone8ag0907 Cone-Chr8:8797371 8.87E-69 dispersed
Cone8ag0907 Cone-Chr8:8797371 Cone8ag1519 Cone-Chr8:11461738 2.85E-31 dispersed
Cone4ag2028 Cone-Chr4:14086405 Cone8ag0907 Cone-Chr8:8797371 1.62E-24 wgd
Cone7ag1942 Cone-Chr7:12392172 Cone8ag0907 Cone-Chr8:8797371 8.91E-175 wgd
Cone8ag0907 Cone-Chr8:8797371 Cone8ag1336 Cone-Chr8:10770928 1.08E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0907 K14803 - mdm:103400985 568.926