Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0908 ATGATGCAATTTTTCAGGGGTATAGTCTGGTTTTTCCTCTTGATGGTTTTATGCAGTGGGGATAGCTCAAATGTAACTAGTACCAGACCCGATGTCGTACATATCGGGGCTTTATTCTCGTATAGTTCTATGATAGGTCAAGTCGCAAAAATTGCAGTAGATGCTGCAGTGGACGATGTGAATTCCGATCCAAACATTCTTCACGGAACCAAGATCAAACTCGCATATCAGGATTCCAATTACAGTGGATTCCTAGGCATCGTACAGTCTTTGAAGTTCATGGAGAGTGACACTATGGCCATAATCGGCCCGCAAAATTCTGTAACTGCCCATGTCATATCTCAAATAGCAAATGAACTCCAAGTCCCTCTAGTATCCTTTTCCGCAACGGACCCCACTCTATCTTCACTCCAGTTCCCTTTCTTTATCCGAACATCCCAAAATGATCTCTTCCAAATGGCTGCTATAGCGGATATAGTCAACTACTATGAATGGAAAGAAGTCATAGCAATCTATGTTGATGATGATGGGGGTAGAAATGGAATTACCGCATTAGGAGAAAAGCTTGCAGAAAAACGTTGTAAGATCTCTTACAAGGCACCTTTGAGACCAGACGCTACTCAAGCTGAGGTCACTGATTTACTGGTTAAATTGGCACAGACAGAATCTCGAATTTTTATTCTCAACACTTATGAAACTACAGCTTTAGTGGTTATAAATGAGGCGAGGTATCTTGGCATGATGGGCCCCGGAAATGTTTGGATTGTTGATAGTTATCTCTCTACTTTACTTGATACAAATTCTCCCCTTCCTGCGGATGATGTTGAGGATATGCAGGGTATAATTACTTTGAGAATGTATACGCCGGATTCTGAACTTAAAAGGAAATTTGTTTCTAGGTGGCCTAATTTGACTCATGGAAAGGAACCTAGTGGCTCACTTGGGTTAAGTACGTACGGTTTATACGCTTATGACACAGTTTGGTTACTTGCTCATGCGATTGATGCATTTTTCGATCAAGGTGGGAAAGTTACATTTTCAAACTATTCGAAATTAACTGAAAAAGATCAGGGAAAGTTACATCTTGACTCTTTGAACATCTTCAATGGAGGAAATTTGTTGCTAAAGAACATTCTTGATGTCAATATGACGGGGGTAACAGGCCAGGTCAAGTTTACTTCAGGTCGGAATCTTGTTTTCCCGGCTTATGAAATCCTGAACGTAATAGGAACTGGAGTTAGAACGGTTGGTTATTGGTCTAATTATTCAGGATTGTCCATTTTACCCCCACAAATGCTTTATTCAAACCCACCTAATCTTTCAAGTTCGAATCAAATGCTGTATAGCGTGATTTGGCCAGGACAAACGGCAGACAAGCCTCGTGGTTGGGTTTTTCCAAACAATGGGAGGCATTTGAGGATTGGAGTTCCAAGAAGAGTTAGTTACCTCGAATTCGTCTCTCCAGTAAAAGGCGGGGAGTCATTCACAGGTTATTGTATTGATGTGTTTGCTGCTGCTGTTAACTTGTTGCCTTATGCCGTTCCCTATAAGTTGATCCCATTTGGAGATGGTCGGAGGAACCCAAGTGGGACCGAGCTTGTTCGTTTGATCACAGCCGGAGAATTTGATGCTGCTGTAGGAGATATTGCGATTGTAACGGAACGGACAAAGATGGTGGATTTTACTCAACCGTATATTGAGTCAGGCCTAGTAGTTGTTGCCCCGATTAAGAAGTCGAATTCCAATGCTTGGGCGTTTTTGAAACCGTTCTCACCCAAAATGTGGGCTGTAACTGCCTCATTTTTTGTTATTGTAGGAGCGGTTGTTTGGATTTTAGAGCATAGAATGAACGATGAATTCCGGGGCTCGCCTAAGAAACAATTCATCACTATCCTCTGGTTTAGCTTTTCTACCTGGTTCTTTGCTCATAGAGAAAGTATGGTCAGCACCCTAGGCCGGCTAGTTCTAATCATATGGCTCTTTGTAGTCCTTATAATAAACTCGAGCTATGTAGCAAGCTTGACCTCGATACTTACTGTCCAACAGCTTTCTTCTCACATTAAAGGCATTGAAACGCTAATGTCCAGCAAAGACCCTGTTGGTTATCAACAAGGTTCATTTTCCCGGAACTATCTGATTGAAGAACTCGGCATTAATGAGTCCCGGCTCGTTCCTCTCATCTCCCCAGAAGATTATGCTAAAGCTCTGAAAGCAGGGCCGGGAAAAGGCGGCGTTTCTGCTATTGTGGATGAACGTGCATACATCGAGCTCTTCCTTTCGACTCAATGTGAATTCAGTATTATCGGTCAAGAGTTCACTAAAAATGGGTGGGGATTCGCTTTTCCGAGAGACACACCTTTAGCAGTCGACATGTCAACTGCAATCCTCAAGCTATCCGAAAATGGAGATCTCCAACGGATCCACGACAAATGGCTGATGAGAAGCGCTTGCACTTCGCAAATGACCAAGTTTCAGGTAGACCGGCTTCAACTAAAGAGCTTTTGGGGTCTCTACGTGGTATGTGGGTTAGCTTGCTTGCTTGCTCTCTTTGTGTACTTCTTCCTCGTGATCCGCCAGTACAACAAGCATTACACCGAAGAACTCGAGAGCAATGATCAAAGCTCTCAGTCCGGACACCTTCAGAAGTTCCTGTCGTTTGCTGATGAAAAGGCTGAGGTGGTGAAAGGACGATCCAAAAGAAGGAAAATGGAGAGGGACTCAAATAGAGGGATGAGCGGAACCAATCTAACCGATTCTTCGATAGTTAGGCGGTTGGATTCTGAAAGTAATCTAACTGATATTTCAATGGGAAGGCACTTAGATTCGTCTTATAGTATGGGTAGTACTAGTAATGATGTTTGA 2862 42.87 MMQFFRGIVWFFLLMVLCSGDSSNVTSTRPDVVHIGALFSYSSMIGQVAKIAVDAAVDDVNSDPNILHGTKIKLAYQDSNYSGFLGIVQSLKFMESDTMAIIGPQNSVTAHVISQIANELQVPLVSFSATDPTLSSLQFPFFIRTSQNDLFQMAAIADIVNYYEWKEVIAIYVDDDGGRNGITALGEKLAEKRCKISYKAPLRPDATQAEVTDLLVKLAQTESRIFILNTYETTALVVINEARYLGMMGPGNVWIVDSYLSTLLDTNSPLPADDVEDMQGIITLRMYTPDSELKRKFVSRWPNLTHGKEPSGSLGLSTYGLYAYDTVWLLAHAIDAFFDQGGKVTFSNYSKLTEKDQGKLHLDSLNIFNGGNLLLKNILDVNMTGVTGQVKFTSGRNLVFPAYEILNVIGTGVRTVGYWSNYSGLSILPPQMLYSNPPNLSSSNQMLYSVIWPGQTADKPRGWVFPNNGRHLRIGVPRRVSYLEFVSPVKGGESFTGYCIDVFAAAVNLLPYAVPYKLIPFGDGRRNPSGTELVRLITAGEFDAAVGDIAIVTERTKMVDFTQPYIESGLVVVAPIKKSNSNAWAFLKPFSPKMWAVTASFFVIVGAVVWILEHRMNDEFRGSPKKQFITILWFSFSTWFFAHRESMVSTLGRLVLIIWLFVVLIINSSYVASLTSILTVQQLSSHIKGIETLMSSKDPVGYQQGSFSRNYLIEELGINESRLVPLISPEDYAKALKAGPGKGGVSAIVDERAYIELFLSTQCEFSIIGQEFTKNGWGFAFPRDTPLAVDMSTAILKLSENGDLQRIHDKWLMRSACTSQMTKFQVDRLQLKSFWGLYVVCGLACLLALFVYFFLVIRQYNKHYTEELESNDQSSQSGHLQKFLSFADEKAEVVKGRSKRRKMERDSNRGMSGTNLTDSSIVRRLDSESNLTDISMGRHLDSSYSMGSTSNDV 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8803388 8807127 + Conep08aG0093400.1 Cone8ag0908 443457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0908 953 SUPERFAMILY Periplasmic binding protein-like I 28 463 IPR028082 -
Cone8ag0908 953 SMART GluR_14 473 814 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone8ag0908 953 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Cone8ag0908 953 PIRSF IGluLR_plant 1 946 IPR017103 -
Cone8ag0908 953 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Cone8ag0908 953 FunFam Glutamate receptor 148 299 - -
Cone8ag0908 953 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone8ag0908 953 MobiDBLite consensus disorder prediction 894 916 - -
Cone8ag0908 953 Gene3D - 467 582 - -
Cone8ag0908 953 FunFam Glutamate receptor 583 713 - -
Cone8ag0908 953 FunFam Glutamate receptor 709 816 - -
Cone8ag0908 953 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 881 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone8ag0908 953 CDD GluR_Plant 472 812 - -
Cone8ag0908 953 MobiDBLite consensus disorder prediction 894 908 - -
Cone8ag0908 953 Gene3D - 51 400 - -
Cone8ag0908 953 Gene3D - 148 425 - -
Cone8ag0908 953 FunFam Glutamate receptor 467 583 - -
Cone8ag0908 953 Pfam Bacterial extracellular solute-binding proteins, family 3 495 591 IPR001638 -
Cone8ag0908 953 CDD PBP1_GABAb_receptor_plant 34 426 IPR044440 -
Cone8ag0908 953 Gene3D - 583 707 - -
Cone8ag0908 953 Gene3D - 751 819 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1339 Cone-Chr3:32373385 Cone8ag0908 Cone-Chr8:8803388 5.97E-294 dispersed
Cone3ag1340 Cone-Chr3:32383157 Cone8ag0908 Cone-Chr8:8803388 2.90E-295 dispersed
Cone7ag1639 Cone-Chr7:11075409 Cone8ag0908 Cone-Chr8:8803388 5.07E-167 dispersed
Cone7ag1640 Cone-Chr7:11081929 Cone8ag0908 Cone-Chr8:8803388 3.02E-152 dispersed
Cone7ag1944 Cone-Chr7:12396614 Cone8ag0908 Cone-Chr8:8803388 4.81E-87 dispersed
Cone8ag0908 Cone-Chr8:8803388 Cone9ag0979 Cone-Chr9:4988715 7.67E-122 dispersed
Cone12ag0877 Cone-Chr12:7816693 Cone8ag0908 Cone-Chr8:8803388 0 wgd
Cone12ag1294 Cone-Chr12:9853275 Cone8ag0908 Cone-Chr8:8803388 0 wgd
Cone4ag2030 Cone-Chr4:14092024 Cone8ag0908 Cone-Chr8:8803388 3.83E-297 wgd
Cone6ag1711 Cone-Chr6:12917543 Cone8ag0908 Cone-Chr8:8803388 1.58E-141 wgd
Cone7ag1943 Cone-Chr7:12394537 Cone8ag0908 Cone-Chr8:8803388 5.63E-82 wgd
Cone8ag0908 Cone-Chr8:8803388 Cone8ag1337 Cone-Chr8:10774452 5.52E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0908 K05387 - csv:101213408 1310.43