Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0912 ATGACTCGTTCTACCAGCATCATGAGAAGTCTCCTCGCCACCACCACAAACAACTCCAGCTCACAACCGTTGGCACCACCGCCTCAGGCGGTGGCATTGAAATCAGATTTCGTCGTCATACTTGCCGCCCTACTCTGTGCCCTAATCTGCATGGTCGGCCTAATAGCCGTCGCTCGCTGCGCATGGCTCCGCCGCGGCTCCGGCGGAACCTCCAGCTCCGCCACTCACTCCTCCGCCAACAAAGGCCTAAAAAAGAAGGTCCTCCAGTCTCTACCTAAATTCACATACTCCTCGACCGAAGCGAAGATAAAATACGCATCGGAATGCTCGATCTGCTTGGGCGATTTTGCAGAAGGAGACGAGATCCGTGTTCTGCCGCAGTGCGGTCACTGTTTCCACGTAGGATGCGTCGACACGTGGCTCGGATCTCACTCCTCTTGTCCTTCCTGCCGTCAGATTCTCGTCGTCGCCACTCGCTGCCAGAAGTGCGGTCAGTTCCCGACCTCAAGCGCCGGAGCTGGATCTGCAGAAACGGAGCGCAAGGCGAGGGAAGAGAATTCTTCTACTTCTAATTACTCCGGGTTTCTGCCATGA 594 56.06 MTRSTSIMRSLLATTTNNSSSQPLAPPPQAVALKSDFVVILAALLCALICMVGLIAVARCAWLRRGSGGTSSSATHSSANKGLKKKVLQSLPKFTYSSTEAKIKYASECSICLGDFAEGDEIRVLPQCGHCFHVGCVDTWLGSHSSCPSCRQILVVATRCQKCGQFPTSSAGAGSAETERKAREENSSTSNYSGFLP 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8839713 8840735 + Conep08aG0093800.1 Cone8ag0912 443461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0912 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 155 IPR013083 -
Cone8ag0912 197 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 185 IPR052788 -
Cone8ag0912 197 FunFam E3 ubiquitin-protein ligase ATL6 71 157 - -
Cone8ag0912 197 SMART ring_2 109 150 IPR001841 -
Cone8ag0912 197 CDD RING-H2_EL5-like 108 151 - -
Cone8ag0912 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cone8ag0912 197 MobiDBLite consensus disorder prediction 167 197 - -
Cone8ag0912 197 SUPERFAMILY RING/U-box 90 164 - -
Cone8ag0912 197 Pfam Ring finger domain 108 151 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0409 Cone-Chr5:1743634 Cone8ag0912 Cone-Chr8:8839713 3.18E-18 dispersed
Cone12ag0881 Cone-Chr12:7847918 Cone8ag0912 Cone-Chr8:8839713 5.17E-103 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone8ag0912 Cone-Chr8:8839713 1.62E-58 wgd
Cone20ag0007 Cone-Chr20:67139 Cone8ag0912 Cone-Chr8:8839713 6.60E-51 wgd
Cone4ag2034 Cone-Chr4:14120697 Cone8ag0912 Cone-Chr8:8839713 5.15E-22 wgd
Cone7ag1948 Cone-Chr7:12422298 Cone8ag0912 Cone-Chr8:8839713 7.91E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0912 - - - 0.0