Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0922 ATGAGTGATCCGAACGAGAATGAGAGTACTGGACAAGATGTGCCAGTAGCTATGGAAGAAGACCCCCAAGTTAATGAGGAAGCTGCATCCGATGATTCTACTCACTCTTTGCTTGCTGAGGAAACTCCGAATCTCCTTGATAATGGAAATGCCTTACCTGAAACTCAAACTGATTCTAAAACTGCTCTCGATGATAAGAATTTAGACTCTCAAACCATTCCAGAGCAACCAAATCAAGATTCTCCTCCTTCAGTTCCCTTGCAAACTGAACAAGAATTGGCCGAGCCGGATGTCAAACCTACTATTGACGCCAAGACAGAATCCAATGAATTGCGTAGAAATGAGTCAAGCCCTATTTCTATCGTTAAAACTGATCAGCCTTCCACAGAGACCAAACCTGAAGCTAGTGAGGTGCCTGAATCTAAAACGGGTATTGCAGATGACAACTTAGTGGCAAGTCATGATGAACCTGCAACTCCTCAGCCTGCATCTTCTCTTATGAAATCTGAAAGTGAAAATGCTGGAGATGTGAAGGATAAGGTCATTGAAGACGATGTTGCTACACCTGCAAAGAATGGGAACTCAACCATGAATCGCTCTTTTCTTTTTGATGATCATTATTCTTATGGTAGCGAATCGGGGACTGAAGAAGACCAATCGAATTTCATGAAGGAGCTTGAAAACTTTTTCAGGGAGAGGAGCATGGAATTTAAACCTCCCAAGTTCTATGGAGAGGGTCTAAATTGTCTCAAGTTGTGGAGAGCTGTGACTAGGTTGGGTGGCTATGATAAGGTGACTTCATGCAAGCTGTGGCGACAAGTTGGGGAGTCCTTCAAGCCTCCAAAGACATGCACCACAGTGTCATGGACATTCCGAGGTTTTTATGAGAAGGCACTCCTTGATTATGAGAGGCATAAAACTCGGGGTGGTGAGCTTAATATACCCATCGTTACGCACTCGGAGCCTTTGAGCAATGAAAATTCGGATTTAGGATCTGGTAGAGCACGAAGGGATGCTGCTGCACGAGCTATGCAGGGCTGGCACTCTCAGCGTCTTTTGGGTAATGGAGAAGTGAGTGACCCTATTATCAAGGACAAGAAATCTATTTCCTTGCAAAAACGTGAAAAACAGCTAAAGAATATTGGTTTACTTAAACGTAAGAAACCATCATATATGGAGCATGAGGTCAAAGCTGTACGTTCCAAAGGAATAGTAGTATCAAAACCACAATTGGACATAGCAGTTGTTGATATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTACAAAGAACAAAAGATTGTTATGAGGTTTATGCTTTAGTTCCAGGACTTCTCCGTGAGGAGGTGCGTGTTCAATCGGATCCGGCAGGACGTCTGGTAATAAGCGGTGAACCTGAACATTCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTTGTCAGCTTACCTTCAAGAATCGACCCGCATCAGACCTCAGCTGTGGTTACCTTGCATGGACAGTTATTTGTTCGAGTTCCCTTTGAGCAGTCAGAATAA 1542 43.77 MSDPNENESTGQDVPVAMEEDPQVNEEAASDDSTHSLLAEETPNLLDNGNALPETQTDSKTALDDKNLDSQTIPEQPNQDSPPSVPLQTEQELAEPDVKPTIDAKTESNELRRNESSPISIVKTDQPSTETKPEASEVPESKTGIADDNLVASHDEPATPQPASSLMKSESENAGDVKDKVIEDDVATPAKNGNSTMNRSFLFDDHYSYGSESGTEEDQSNFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTRGGELNIPIVTHSEPLSNENSDLGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKKSISLQKREKQLKNIGLLKRKKPSYMEHEVKAVRSKGIVVSKPQLDIAVVDIGPPADWVKINVQRTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8895318 8900365 - Conep08aG0094800.1 Cone8ag0922 443471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0922 513 SUPERFAMILY ARID-like 203 316 IPR036431 GO:0003677(InterPro)
Cone8ag0922 513 Gene3D - 216 314 IPR036431 GO:0003677(InterPro)
Cone8ag0922 513 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677(InterPro)
Cone8ag0922 513 SUPERFAMILY HSP20-like chaperones 422 509 IPR008978 -
Cone8ag0922 513 CDD ARID 218 303 - -
Cone8ag0922 513 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 34 512 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Cone8ag0922 513 MobiDBLite consensus disorder prediction 113 134 - -
Cone8ag0922 513 FunFam AT-rich interactive domain-containing protein 3 216 315 - -
Cone8ag0922 513 CDD ACD_sHsps_p23-like 432 508 - -
Cone8ag0922 513 Gene3D - 418 513 IPR008978 -
Cone8ag0922 513 SMART bright_3 217 308 IPR001606 GO:0003677(InterPro)
Cone8ag0922 513 MobiDBLite consensus disorder prediction 1 180 - -
Cone8ag0922 513 Pfam Hsp20/alpha crystallin family 430 512 IPR002068 -
Cone8ag0922 513 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677(InterPro)
Cone8ag0922 513 MobiDBLite consensus disorder prediction 66 88 - -
Cone8ag0922 513 SMART ARID_2 213 303 - -
Cone8ag0922 513 MobiDBLite consensus disorder prediction 96 112 - -
Cone8ag0922 513 MobiDBLite consensus disorder prediction 29 58 - -
Cone8ag0922 513 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 413 513 IPR002068 -
Cone8ag0922 513 FunFam AT-rich interactive domain-containing protein 3 405 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0889 Cone-Chr12:7883086 Cone8ag0922 Cone-Chr8:8895318 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46694 PF00069 Pkinase 2.00E-48 CL0016 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0922 - - - 0.0