Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0943 ATGGAGAATATTGCGGCGCAATTGAAGAGAGGAATATCGAGGCAGTTCTCGACGGGATCGCTCCGGCGAAATCTGAGCCGGCAGTTCACGAGGCAGTCGTCGTTGGATCCTAGACGGAACAACCTCCGGTTCAGTTTCGGGAGGCAATCATCATTGGATCCGATTAGGCGTAGTCCGACACCCGACAACGACCTCTGCGTGCCGGAGAACTTGGACTCGACCATACAGTTGTTGTTCGTGGCTTGCCGAGGGGAAGTTAGAGGAGTGGAAGACCTGCTCAATGAGGGGATCGATGTTAATGGCATAGACTTGGACGGCCGCACAGCGCTTCATATTGCTGCTTGTGAAGGTCACGTTGAAGTCGTGAAGCTCTTGCTCAGCCGTAAAGCTAACATTGATGCTCGTGATCGATGGGGCAGTACGGCAGCTGCTGATGCCAAGTACTATGGAAATACAGAAGTTTATAATATTCTGAAGGCACGAGGAGCAAAAGTTCCGAAAACCAGGAAAACACCAATGACTGTTGCTAATCCCCGAGAAGTTCCGGAGTATGAGCTAAATCCACTTGAGCTTCAGATTCGGAAGAGTGATGGGATCTCCAAGGGAACATATCAAGTTGCTAAATGGAATGGTACAAAGGTTGCTGTAAAAATACTTGATAAAGACAGCTACTCAGATCCTGAATCTATAAATGCATTCAAACATGAGCTTACATTGTTGGAAAAGGTCCGGCATCCAAATGTGGTTCAGTTTGTTGGAGCCGTTACCCAAAATGTACCCATGATGATTGTTTCAGAGTATCATCCAAAGGGTGACCTAACTGCCTATCTTCAAAAGAAAGGACGTCTCTCTCCATCTAAAGCTCTAAGATTTGCGCTTGATATTGCCAGGGGAATGAACTATCTTCATGAATGTAAGCCAGACCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGACAATGGAGGTCAATTGAAGGTAGCTGGATTCGGTTTGATAAGATTGTCAAAAGTTTCACCTGACAAAGCAAAACTAGTCCTGCCAGGGCCAAATATCGACCTCTCAAACTTGTACATGGCACCAGAGGTTTACAAGGACGAGATATTTGACAGGAGCGTGGACGCGTTCTCTTTCGGTCTCATGTTATATGAGATGGTTGAAGGCATACAACCTTTCCATCCCAAACCTTCAGAAGAGGTTTCTCGACTCATATGTTTAGAAGGTCAAAGACCTCCATTCAAGATCAGATTAAAAAGTTATCCACCCGATCTAAGAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGTTGTTAGACCAACTTTCTTTGAGATCATCGTGCGATTAGACAGAATCGTTGCAAACTGCACAAAACAAGGATGGTGGAAAGATACGTTTAAGCTTCCATGGAAATAA 1425 45.05 MENIAAQLKRGISRQFSTGSLRRNLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRSPTPDNDLCVPENLDSTIQLLFVACRGEVRGVEDLLNEGIDVNGIDLDGRTALHIAACEGHVEVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEVYNILKARGAKVPKTRKTPMTVANPREVPEYELNPLELQIRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPESINAFKHELTLLEKVRHPNVVQFVGAVTQNVPMMIVSEYHPKGDLTAYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKVSPDKAKLVLPGPNIDLSNLYMAPEVYKDEIFDRSVDAFSFGLMLYEMVEGIQPFHPKPSEEVSRLICLEGQRPPFKIRLKSYPPDLRELIEECWDPEPVVRPTFFEIIVRLDRIVANCTKQGWWKDTFKLPWK 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9024987 9029064 + Conep08aG0096900.1 Cone8ag0943 443492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0943 474 Pfam Ankyrin repeats (3 copies) 79 166 IPR002110 GO:0005515(InterPro)
Cone8ag0943 474 PRINTS Tyrosine kinase catalytic domain signature 376 398 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 PRINTS Tyrosine kinase catalytic domain signature 423 445 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 PRINTS Tyrosine kinase catalytic domain signature 304 322 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 PRINTS Tyrosine kinase catalytic domain signature 265 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 ProSiteProfiles Protein kinase domain profile. 189 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 PIRSF ILK 8 473 - -
Cone8ag0943 474 CDD STKc_MAP3K-like 199 452 - -
Cone8ag0943 474 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Cone8ag0943 474 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Cone8ag0943 474 SUPERFAMILY Protein kinase-like (PK-like) 201 452 IPR011009 -
Cone8ag0943 474 Pfam Protein tyrosine and serine/threonine kinase 199 451 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 SUPERFAMILY Ankyrin repeat 75 174 IPR036770 -
Cone8ag0943 474 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cone8ag0943 474 FunFam Integrin-linked protein kinase 1 47 184 - -
Cone8ag0943 474 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Cone8ag0943 474 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Cone8ag0943 474 Gene3D Transferase(Phosphotransferase) domain 1 269 468 - -
Cone8ag0943 474 SMART serkin_6 193 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0943 474 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
Cone8ag0943 474 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 81 453 IPR051681 GO:0004674(PANTHER)
Cone8ag0943 474 FunFam Os01g0748600 protein 179 471 - -
Cone8ag0943 474 Gene3D - 55 184 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0233 Cone-Chr1:1509819 Cone8ag0943 Cone-Chr8:9024987 6.30E-82 dispersed
Cone5ag1631 Cone-Chr5:11519173 Cone8ag0943 Cone-Chr8:9024987 7.62E-95 dispersed
Cone8ag0943 Cone-Chr8:9024987 Cone15ag0728 Cone-Chr15:4150184 9.29E-44 dispersed
Cone12ag0915 Cone-Chr12:8050576 Cone8ag0943 Cone-Chr8:9024987 2.31E-244 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83127 PF05910 DUF868 1.40E-92 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0943 - - - 0.0