Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0970 ATGTCATTCCGGAGCATAGTCCGAGATGTAAGGGATAGTATAGGAAGCTTATCAAGACGGGGGTTTGAGGTCAGGCTGTCTGGGCTGACCGGACATAGCCAGGCAAAGTTTCACGGTTCAGTGAATGATTTGCACGATCCAAATAATCTTGTGGTTCAAAATAGCCGTTGGGCTAGCCTTCCACCTGAGCTTCTATATGATGTCATTAGGAGGTTAGAGGAGAGTGAAAGCACCTGGCCCGCCCGGAAACATGTCGTTGCATGTGCTGCCGTTTGTCGTTCTTGGCGGGTCATGTGCAAGGAAATTGTTACAGGTCCGGAAATTTGTGGAAAGCTCACCTTCCCAGTCTCCCTTAAGCAGCCAGGGACACGTGATGGAACCATTCAGTGCTTCATTAAAAGGGATAAATCTAATTTGACATATCATCTCTTTCTGTGTCTTAGCCCTGCCCTGCTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCGAAGCGAACCAGAAAAACTACTAGCCCGGAGTATATTATCTCTATGGATGCTGACCATATTTCAAGATCTAGCAGCTCTTACATTGGAAAGCTGAGGTCAAATTTTCTCGGCACAAAATTCATCATATATGACACACAACCACCCTACAGTTCTACCTCCTCCTCGGGCCCACCAGCCCTTGGCCGAAGCAGCCGGAGATTCTACTCCAAAAAGGTCTCACCCAAAGTCCCAACTGGCAGCTACCCCATAGCTCAGGTCTCCTACGAGCTAAACGTCCTAGGCACACGGGGCCCACGAAGAATGCATTGCGTCATGCAGTCGATCCCAGCATCCTCCCTCCACCTAGGCGGGAATGTCCCGGGCCAACCTGAGCTCCACCCACGAAGCCTCGAGGACTCTTTCCGGAGTATTTCCTTCTCCAAACCGCTTGATCATTCAATGGAGTTTAGCAGCGCCCGGTTTTCCGAGATCAAACAGTCAGGAAATAGTGTTGATGAAGAGGAAGGAAAAGTTAGGCCATTGATTCTGAAGAATAAGCCGCCAAGGTGGCACGAGCAGTTACAGTGCTGGTGTTTGAATTTTCGAGGACGTGTGACAGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCCGCCACACAACCAGGTGCAGGGGCCCCCACCCCTTCCCAGCCGGGTCCACTCGATCACGATAAGATAATTCTGCAGTTTGGGAAAGTCGGGAAAGATATGTTCACTATGGACTACCGGTATCCCCTATCAGCTTTTCAGGCTTTTGCGATCTGCTTGAGCAGCTTTGACACTAAATTGGCTTGTGAATAG 1305 49.27 MSFRSIVRDVRDSIGSLSRRGFEVRLSGLTGHSQAKFHGSVNDLHDPNNLVVQNSRWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRVMCKEIVTGPEICGKLTFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRKTTSPEYIISMDADHISRSSSSYIGKLRSNFLGTKFIIYDTQPPYSSTSSSGPPALGRSSRRFYSKKVSPKVPTGSYPIAQVSYELNVLGTRGPRRMHCVMQSIPASSLHLGGNVPGQPELHPRSLEDSFRSISFSKPLDHSMEFSSARFSEIKQSGNSVDEEEGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPGAGAPTPSQPGPLDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9140265 9143328 + Conep08aG0099800.1 Cone8ag0970 443519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0970 434 Gene3D - 52 103 - -
Cone8ag0970 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cone8ag0970 434 FunFam Tubby-like F-box protein 52 105 - -
Cone8ag0970 434 SUPERFAMILY F-box domain 53 101 IPR036047 GO:0005515(InterPro)
Cone8ag0970 434 CDD F-box_AtTLP-like 57 101 - -
Cone8ag0970 434 FunFam Tubby-like F-box protein 114 434 - -
Cone8ag0970 434 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Cone8ag0970 434 ProSitePatterns Tub family signature 1. 356 369 IPR018066 -
Cone8ag0970 434 PANTHER TUBBY-RELATED 51 433 - -
Cone8ag0970 434 Pfam Tub family 118 429 IPR000007 -
Cone8ag0970 434 SUPERFAMILY Tubby C-terminal domain-like 106 434 IPR025659 -
Cone8ag0970 434 Gene3D Tubby Protein; Chain A 116 428 IPR025659 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 242 269 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 338 355 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 356 372 IPR000007 -
Cone8ag0970 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0784 Cone-Chr17:6042285 Cone8ag0970 Cone-Chr8:9140265 1.26E-214 dispersed
Cone20ag0378 Cone-Chr20:1761994 Cone8ag0970 Cone-Chr8:9140265 1.45E-222 dispersed
Cone4ag1499 Cone-Chr4:11673097 Cone8ag0970 Cone-Chr8:9140265 2.38E-210 dispersed
Cone6ag1629 Cone-Chr6:12539797 Cone8ag0970 Cone-Chr8:9140265 5.79E-149 dispersed
Cone7ag1448 Cone-Chr7:10255177 Cone8ag0970 Cone-Chr8:9140265 3.26E-233 dispersed
Cone7ag1830 Cone-Chr7:11921540 Cone8ag0970 Cone-Chr8:9140265 3.86E-139 dispersed
Cone8ag0970 Cone-Chr8:9140265 Cone9ag1554 Cone-Chr9:11270251 1.64E-147 dispersed
Cone12ag0937 Cone-Chr12:8169180 Cone8ag0970 Cone-Chr8:9140265 3.51E-306 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46695 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0970 K19600 - gmx:100814578 719.153