Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag0970 | ATGTCATTCCGGAGCATAGTCCGAGATGTAAGGGATAGTATAGGAAGCTTATCAAGACGGGGGTTTGAGGTCAGGCTGTCTGGGCTGACCGGACATAGCCAGGCAAAGTTTCACGGTTCAGTGAATGATTTGCACGATCCAAATAATCTTGTGGTTCAAAATAGCCGTTGGGCTAGCCTTCCACCTGAGCTTCTATATGATGTCATTAGGAGGTTAGAGGAGAGTGAAAGCACCTGGCCCGCCCGGAAACATGTCGTTGCATGTGCTGCCGTTTGTCGTTCTTGGCGGGTCATGTGCAAGGAAATTGTTACAGGTCCGGAAATTTGTGGAAAGCTCACCTTCCCAGTCTCCCTTAAGCAGCCAGGGACACGTGATGGAACCATTCAGTGCTTCATTAAAAGGGATAAATCTAATTTGACATATCATCTCTTTCTGTGTCTTAGCCCTGCCCTGCTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCGAAGCGAACCAGAAAAACTACTAGCCCGGAGTATATTATCTCTATGGATGCTGACCATATTTCAAGATCTAGCAGCTCTTACATTGGAAAGCTGAGGTCAAATTTTCTCGGCACAAAATTCATCATATATGACACACAACCACCCTACAGTTCTACCTCCTCCTCGGGCCCACCAGCCCTTGGCCGAAGCAGCCGGAGATTCTACTCCAAAAAGGTCTCACCCAAAGTCCCAACTGGCAGCTACCCCATAGCTCAGGTCTCCTACGAGCTAAACGTCCTAGGCACACGGGGCCCACGAAGAATGCATTGCGTCATGCAGTCGATCCCAGCATCCTCCCTCCACCTAGGCGGGAATGTCCCGGGCCAACCTGAGCTCCACCCACGAAGCCTCGAGGACTCTTTCCGGAGTATTTCCTTCTCCAAACCGCTTGATCATTCAATGGAGTTTAGCAGCGCCCGGTTTTCCGAGATCAAACAGTCAGGAAATAGTGTTGATGAAGAGGAAGGAAAAGTTAGGCCATTGATTCTGAAGAATAAGCCGCCAAGGTGGCACGAGCAGTTACAGTGCTGGTGTTTGAATTTTCGAGGACGTGTGACAGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCCGCCACACAACCAGGTGCAGGGGCCCCCACCCCTTCCCAGCCGGGTCCACTCGATCACGATAAGATAATTCTGCAGTTTGGGAAAGTCGGGAAAGATATGTTCACTATGGACTACCGGTATCCCCTATCAGCTTTTCAGGCTTTTGCGATCTGCTTGAGCAGCTTTGACACTAAATTGGCTTGTGAATAG | 1305 | 49.27 | MSFRSIVRDVRDSIGSLSRRGFEVRLSGLTGHSQAKFHGSVNDLHDPNNLVVQNSRWASLPPELLYDVIRRLEESESTWPARKHVVACAAVCRSWRVMCKEIVTGPEICGKLTFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRKTTSPEYIISMDADHISRSSSSYIGKLRSNFLGTKFIIYDTQPPYSSTSSSGPPALGRSSRRFYSKKVSPKVPTGSYPIAQVSYELNVLGTRGPRRMHCVMQSIPASSLHLGGNVPGQPELHPRSLEDSFRSISFSKPLDHSMEFSSARFSEIKQSGNSVDEEEGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPGAGAPTPSQPGPLDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9140265 | 9143328 | + | Conep08aG0099800.1 | Cone8ag0970 | 443519 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag0970 | 434 | Gene3D | - | 52 | 103 | - | - | |
Cone8ag0970 | 434 | ProSitePatterns | Tub family signature 2. | 419 | 434 | IPR018066 | - | |
Cone8ag0970 | 434 | FunFam | Tubby-like F-box protein | 52 | 105 | - | - | |
Cone8ag0970 | 434 | SUPERFAMILY | F-box domain | 53 | 101 | IPR036047 | GO:0005515(InterPro) | |
Cone8ag0970 | 434 | CDD | F-box_AtTLP-like | 57 | 101 | - | - | |
Cone8ag0970 | 434 | FunFam | Tubby-like F-box protein | 114 | 434 | - | - | |
Cone8ag0970 | 434 | Pfam | F-box-like | 57 | 100 | IPR001810 | GO:0005515(InterPro) | |
Cone8ag0970 | 434 | ProSitePatterns | Tub family signature 1. | 356 | 369 | IPR018066 | - | |
Cone8ag0970 | 434 | PANTHER | TUBBY-RELATED | 51 | 433 | - | - | |
Cone8ag0970 | 434 | Pfam | Tub family | 118 | 429 | IPR000007 | - | |
Cone8ag0970 | 434 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 434 | IPR025659 | - | |
Cone8ag0970 | 434 | Gene3D | Tubby Protein; Chain A | 116 | 428 | IPR025659 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 189 | 213 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 242 | 269 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 338 | 355 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 173 | 189 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 412 | 434 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 356 | 372 | IPR000007 | - | |
Cone8ag0970 | 434 | PRINTS | Tubby superfamily signature | 391 | 410 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0784 | Cone-Chr17:6042285 | Cone8ag0970 | Cone-Chr8:9140265 | 1.26E-214 | dispersed | |
Cone20ag0378 | Cone-Chr20:1761994 | Cone8ag0970 | Cone-Chr8:9140265 | 1.45E-222 | dispersed | |
Cone4ag1499 | Cone-Chr4:11673097 | Cone8ag0970 | Cone-Chr8:9140265 | 2.38E-210 | dispersed | |
Cone6ag1629 | Cone-Chr6:12539797 | Cone8ag0970 | Cone-Chr8:9140265 | 5.79E-149 | dispersed | |
Cone7ag1448 | Cone-Chr7:10255177 | Cone8ag0970 | Cone-Chr8:9140265 | 3.26E-233 | dispersed | |
Cone7ag1830 | Cone-Chr7:11921540 | Cone8ag0970 | Cone-Chr8:9140265 | 3.86E-139 | dispersed | |
Cone8ag0970 | Cone-Chr8:9140265 | Cone9ag1554 | Cone-Chr9:11270251 | 1.64E-147 | dispersed | |
Cone12ag0937 | Cone-Chr12:8169180 | Cone8ag0970 | Cone-Chr8:9140265 | 3.51E-306 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46695 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag0970 | K19600 | - | gmx:100814578 | 719.153 |