Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1005 ATGGCGGAGCGTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCTGAAGTTCGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAAGAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACTGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACATTGCTACTATGCTCACGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATAGTCTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTCGATCTGCCAAAGAGACTGATGAGGTCTCATCAACTTCCTCAATCGGTGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCGACGTTTGGAAATGTGGACCCCCCTAGCCCATCTAGTACCATGACTTCATTATATGAAGATGTTGATTCTGATCACCAAGCAACTTCGAAAATTGATTCCTCTCCAGGGTCACTACAAACTGGAAATGGTCCTCTGATGGATAAGTTGGATGGCAACACCTCGGGATTTTATATTCCGCAACCCTATTCTGATTATCTATCAGAAATTCAGACAGATGCTTACAGTGATAATAATGGAGGTATTAATATGATCGACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGATTCAACTCTTGGACAACAAAATATGATTCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCCATGGCAGATTCCTCTTGAAGACTTCCCAGAGGGATCAGGGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATAAGTAACAGGTTATCTGAGCAAGGAAATCATGATGATATTTATGGAAGTAAGCTTAGTATAAGTAATACTCATCCTGATATGCAAAATCATCAACCGTTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCGATGAAATGGAGTTCTGAGAATGATATCCCTGTCAAAGGAAATTTGCCCTACCCTTTGGCCTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGACTGTGGAGATATTGTTGGTGATTCATCATTGAGCCCCTCTCTTTCTCAAGACCAACTTTTCAGTATAAGCAGTTTTTCACCAAAGTGGACATACATGGACTCAGAAGCTGAGGTTCTGATTATAGGAAGATATTTGGGGGCTCAACAAATTGTTGCTATCAACTGGTCCTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTAGGGCAAGTCCCTTTTTACATAACATGCTCCAATAGAGTAGCTTGCAGTGAAGTTCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGATATAGATGTGAAAGATATTTATAATGGCGCTTCATATGAAATGCTTCTGCATATGCAACTTGTCAGATTACTGTCTTCAACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAACTCATTGCATTAAATGAGGAAGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATGGAAAAAGTCTCTTTTTGAAAAGGCAATAAAAGAAAAGTTGTATTCATGGCTTTTTCGAAAGATAACTGAAGACAGTAAAGGGCCTAACATGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCCTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGCGATGATAATGGATGGACAGCTCTTCATTGGGCAGCATTCTGTGGCAGAGAGCAGACAATTGCGGTCCTAATCTCTCTGGGTGCGGCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACACCAGCAGACCTTGCATCCTCCAACGGGCACAAAGGAATCTCTGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACCGATACAAAGGAAGATAGCACCTTAGAAGCTTCAACCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCGTTGGTGGTTATAATCCATATGAGCTGTCACTCAAGGATTCACTTACTGCCATCTGTAACGCTACACAGGCTGCTGGTCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTGACAGAGAAGAATGGAGATGATGAATTTGAGAAACAGGCTTCTTTGGGCATTTCTGCTCGAGTCCGTAAGCCCGGACAAGGCTATGGACATGTCCAAGCTGCCGCTGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAAAGAGAAAAGAATTTCTCATTATTCGTCAAAGAATCGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGAACGATCATCTGGTCAGTAGGCATTCTGGAAAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGGGGCTTCAAACCAGATGGAATTAGTAAGGAACCCAACCCAGAGACCAAGCGAGATGCACTTACTAAAGATAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAGAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAATATCCAGAAGGACGTGATCAATACCGTAGGCTACTTACCGTTGTTCAAGGCTTCCGTGAAACAAAGGTGTCGGGTATGGCTATTACTAGTCTGGATCAGGAAATTCCATATGGAAATGATGATGAGGACCTGATCGATTACGACACACTCCTGGATGATGACACTCTAATGTCCATAACATTTGATTTAAAAGAGTGA 3198 41.62 MAERGSYGLGPRLDIKQLQIEAQNRWLRPAEVREILCNYQKFHIASEPPKRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTRSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSPSSTMTSLYEDVDSDHQATSKIDSSPGSLQTGNGPLMDKLDGNTSGFYIPQPYSDYLSEIQTDAYSDNNGGINMIDSQKTLGSASWEEIFKQSMTDIPSHDSTLGQQNMIPGKLMGNTAVKEYGLPWQIPLEDFPEGSGDQLSDLESLYEISNRLSEQGNHDDIYGSKLSISNTHPDMQNHQPLPNDLHIQLTNDESQFPMKWSSENDIPVKGNLPYPLAFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVDCGDIVGDSSLSPSLSQDQLFSISSFSPKWTYMDSEAEVLIIGRYLGAQQIVAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASYEMLLHMQLVRLLSSTFVNASRNLFEGALEKHNLIIKLIALNEEEDCYREEANIQKDSMQNEWKKSLFEKAIKEKLYSWLFRKITEDSKGPNMLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGAATGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDTKEDSTLEASTPKPVQTVSDRMPTPIVGGYNPYELSLKDSLTAICNATQAAGRIYQMFRIQSFQRKQLTEKNGDDEFEKQASLGISARVRKPGQGYGHVQAAAVHIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDGISKEPNPETKRDALTKDKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVQGFRETKVSGMAITSLDQEIPYGNDDEDLIDYDTLLDDDTLMSITFDLKE 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9380148 9387399 + Conep08aG0103300.1 Cone8ag1005 443554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 143 213 - -
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 143 218 - -
Cone8ag1005 1065 SMART ANK_2a 743 772 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 SMART ANK_2a 671 700 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 SMART ANK_2a 704 733 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 Pfam Ankyrin repeats (3 copies) 676 765 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Coils Coil 974 994 - -
Cone8ag1005 1065 FunFam Calmodulin-binding transcription activator 2 877 925 - -
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Gene3D - 877 925 - -
Cone8ag1005 1065 Gene3D - 626 774 IPR036770 -
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat region circular profile. 704 729 - -
Cone8ag1005 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1021 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone8ag1005 1065 CDD IPT 471 557 - -
Cone8ag1005 1065 SUPERFAMILY Ankyrin repeat 662 765 IPR036770 -
Cone8ag1005 1065 SUPERFAMILY E set domains 472 556 IPR014756 -
Cone8ag1005 1065 ProSiteProfiles IQ motif profile. 879 907 - -
Cone8ag1005 1065 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam IPT/TIG domain 471 544 IPR002909 -
Cone8ag1005 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 928 IPR027417 -
Cone8ag1005 1065 Pfam IQ calmodulin-binding motif 903 922 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam IQ calmodulin-binding motif 880 898 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 SMART iq_5 877 899 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 SMART iq_5 900 922 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 FunFam Calmodulin-binding transcription activator 2 465 560 - -
Cone8ag1005 1065 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 Gene3D Immunoglobulins 465 562 IPR013783 -
Cone8ag1005 1065 ProSiteProfiles IQ motif profile. 901 925 - -
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 782 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0227 Cone-Chr8:1250902 Cone8ag1005 Cone-Chr8:9380148 2.77E-227 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag1005 Cone-Chr8:9380148 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46698 PF04564 U-box 4.40E-17 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1005 K21596 - csv:101203707 1258.82