Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag1005 | ATGGCGGAGCGTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCTGAAGTTCGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAAGAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACTGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACATTGCTACTATGCTCACGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATAGTCTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTCGATCTGCCAAAGAGACTGATGAGGTCTCATCAACTTCCTCAATCGGTGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCGACGTTTGGAAATGTGGACCCCCCTAGCCCATCTAGTACCATGACTTCATTATATGAAGATGTTGATTCTGATCACCAAGCAACTTCGAAAATTGATTCCTCTCCAGGGTCACTACAAACTGGAAATGGTCCTCTGATGGATAAGTTGGATGGCAACACCTCGGGATTTTATATTCCGCAACCCTATTCTGATTATCTATCAGAAATTCAGACAGATGCTTACAGTGATAATAATGGAGGTATTAATATGATCGACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGATTCAACTCTTGGACAACAAAATATGATTCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCCATGGCAGATTCCTCTTGAAGACTTCCCAGAGGGATCAGGGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATAAGTAACAGGTTATCTGAGCAAGGAAATCATGATGATATTTATGGAAGTAAGCTTAGTATAAGTAATACTCATCCTGATATGCAAAATCATCAACCGTTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCGATGAAATGGAGTTCTGAGAATGATATCCCTGTCAAAGGAAATTTGCCCTACCCTTTGGCCTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGACTGTGGAGATATTGTTGGTGATTCATCATTGAGCCCCTCTCTTTCTCAAGACCAACTTTTCAGTATAAGCAGTTTTTCACCAAAGTGGACATACATGGACTCAGAAGCTGAGGTTCTGATTATAGGAAGATATTTGGGGGCTCAACAAATTGTTGCTATCAACTGGTCCTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTAGGGCAAGTCCCTTTTTACATAACATGCTCCAATAGAGTAGCTTGCAGTGAAGTTCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGATATAGATGTGAAAGATATTTATAATGGCGCTTCATATGAAATGCTTCTGCATATGCAACTTGTCAGATTACTGTCTTCAACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAACTCATTGCATTAAATGAGGAAGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATGGAAAAAGTCTCTTTTTGAAAAGGCAATAAAAGAAAAGTTGTATTCATGGCTTTTTCGAAAGATAACTGAAGACAGTAAAGGGCCTAACATGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCCTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGCGATGATAATGGATGGACAGCTCTTCATTGGGCAGCATTCTGTGGCAGAGAGCAGACAATTGCGGTCCTAATCTCTCTGGGTGCGGCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACACCAGCAGACCTTGCATCCTCCAACGGGCACAAAGGAATCTCTGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACCGATACAAAGGAAGATAGCACCTTAGAAGCTTCAACCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCGTTGGTGGTTATAATCCATATGAGCTGTCACTCAAGGATTCACTTACTGCCATCTGTAACGCTACACAGGCTGCTGGTCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTGACAGAGAAGAATGGAGATGATGAATTTGAGAAACAGGCTTCTTTGGGCATTTCTGCTCGAGTCCGTAAGCCCGGACAAGGCTATGGACATGTCCAAGCTGCCGCTGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAAAGAGAAAAGAATTTCTCATTATTCGTCAAAGAATCGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGAACGATCATCTGGTCAGTAGGCATTCTGGAAAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGGGGCTTCAAACCAGATGGAATTAGTAAGGAACCCAACCCAGAGACCAAGCGAGATGCACTTACTAAAGATAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAGAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAATATCCAGAAGGACGTGATCAATACCGTAGGCTACTTACCGTTGTTCAAGGCTTCCGTGAAACAAAGGTGTCGGGTATGGCTATTACTAGTCTGGATCAGGAAATTCCATATGGAAATGATGATGAGGACCTGATCGATTACGACACACTCCTGGATGATGACACTCTAATGTCCATAACATTTGATTTAAAAGAGTGA | 3198 | 41.62 | MAERGSYGLGPRLDIKQLQIEAQNRWLRPAEVREILCNYQKFHIASEPPKRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTRSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSPSSTMTSLYEDVDSDHQATSKIDSSPGSLQTGNGPLMDKLDGNTSGFYIPQPYSDYLSEIQTDAYSDNNGGINMIDSQKTLGSASWEEIFKQSMTDIPSHDSTLGQQNMIPGKLMGNTAVKEYGLPWQIPLEDFPEGSGDQLSDLESLYEISNRLSEQGNHDDIYGSKLSISNTHPDMQNHQPLPNDLHIQLTNDESQFPMKWSSENDIPVKGNLPYPLAFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVDCGDIVGDSSLSPSLSQDQLFSISSFSPKWTYMDSEAEVLIIGRYLGAQQIVAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASYEMLLHMQLVRLLSSTFVNASRNLFEGALEKHNLIIKLIALNEEEDCYREEANIQKDSMQNEWKKSLFEKAIKEKLYSWLFRKITEDSKGPNMLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGAATGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDTKEDSTLEASTPKPVQTVSDRMPTPIVGGYNPYELSLKDSLTAICNATQAAGRIYQMFRIQSFQRKQLTEKNGDDEFEKQASLGISARVRKPGQGYGHVQAAAVHIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDGISKEPNPETKRDALTKDKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVQGFRETKVSGMAITSLDQEIPYGNDDEDLIDYDTLLDDDTLMSITFDLKE | 1065 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9380148 | 9387399 | + | Conep08aG0103300.1 | Cone8ag1005 | 443554 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag1005 | 1065 | MobiDBLite | consensus disorder prediction | 143 | 213 | - | - | |
Cone8ag1005 | 1065 | MobiDBLite | consensus disorder prediction | 143 | 218 | - | - | |
Cone8ag1005 | 1065 | SMART | ANK_2a | 743 | 772 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | SMART | ANK_2a | 704 | 733 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | Pfam | CG-1 domain | 21 | 134 | IPR005559 | GO:0003677(InterPro) | |
Cone8ag1005 | 1065 | Pfam | Ankyrin repeats (3 copies) | 676 | 765 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | Coils | Coil | 974 | 994 | - | - | |
Cone8ag1005 | 1065 | FunFam | Calmodulin-binding transcription activator 2 | 877 | 925 | - | - | |
Cone8ag1005 | 1065 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | Gene3D | - | 877 | 925 | - | - | |
Cone8ag1005 | 1065 | Gene3D | - | 626 | 774 | IPR036770 | - | |
Cone8ag1005 | 1065 | ProSiteProfiles | Ankyrin repeat region circular profile. | 704 | 729 | - | - | |
Cone8ag1005 | 1065 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 14 | 1021 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Cone8ag1005 | 1065 | CDD | IPT | 471 | 557 | - | - | |
Cone8ag1005 | 1065 | SUPERFAMILY | Ankyrin repeat | 662 | 765 | IPR036770 | - | |
Cone8ag1005 | 1065 | SUPERFAMILY | E set domains | 472 | 556 | IPR014756 | - | |
Cone8ag1005 | 1065 | ProSiteProfiles | IQ motif profile. | 879 | 907 | - | - | |
Cone8ag1005 | 1065 | SMART | CG_1_2 | 18 | 136 | IPR005559 | GO:0003677(InterPro) | |
Cone8ag1005 | 1065 | ProSiteProfiles | Ankyrin repeat profile. | 704 | 736 | IPR002110 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | Pfam | IPT/TIG domain | 471 | 544 | IPR002909 | - | |
Cone8ag1005 | 1065 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 877 | 928 | IPR027417 | - | |
Cone8ag1005 | 1065 | Pfam | IQ calmodulin-binding motif | 903 | 922 | IPR000048 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | Pfam | IQ calmodulin-binding motif | 880 | 898 | IPR000048 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | SMART | iq_5 | 877 | 899 | IPR000048 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | SMART | iq_5 | 900 | 922 | IPR000048 | GO:0005515(InterPro) | |
Cone8ag1005 | 1065 | FunFam | Calmodulin-binding transcription activator 2 | 465 | 560 | - | - | |
Cone8ag1005 | 1065 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 15 | 141 | IPR005559 | GO:0003677(InterPro) | |
Cone8ag1005 | 1065 | Gene3D | Immunoglobulins | 465 | 562 | IPR013783 | - | |
Cone8ag1005 | 1065 | ProSiteProfiles | IQ motif profile. | 901 | 925 | - | - | |
Cone8ag1005 | 1065 | MobiDBLite | consensus disorder prediction | 782 | 802 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone8ag0227 | Cone-Chr8:1250902 | Cone8ag1005 | Cone-Chr8:9380148 | 2.77E-227 | dispersed | |
Cone12ag0971 | Cone-Chr12:8367766 | Cone8ag1005 | Cone-Chr8:9380148 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46698 | PF04564 | U-box | 4.40E-17 | CL0229 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag1005 | K21596 | - | csv:101203707 | 1258.82 |