Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1005 ATGGCGGAGCGTGGATCTTATGGATTAGGTCCTCGTTTAGATATTAAACAATTACAAATAGAAGCTCAAAATAGATGGTTGCGGCCAGCTGAAGTTCGTGAAATTCTCTGCAATTATCAGAAGTTTCATATTGCATCAGAGCCTCCAAAGAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTAAGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGAAAAAAGATGGCAAGACTGTGAAGGAAGCTCATGAGAAATTGAAGGTTGGAAGTGTTGATGTATTACATTGCTACTATGCTCACGGAGAAGAAAATGAAAACTTTCAAAGGCGTAGCTATTGGATGCTTGAAGAGAATTTGACGCACATAGTCTTTGTTCACTACTTGCAAGTTAAGGGTAATAGAACCTATACTCGATCTGCCAAAGAGACTGATGAGGTCTCATCAACTTCCTCAATCGGTGGTCCTAGTAGTTCCAGCTCTCCTACAAGTCACACTAGAGCGACGTTTGGAAATGTGGACCCCCCTAGCCCATCTAGTACCATGACTTCATTATATGAAGATGTTGATTCTGATCACCAAGCAACTTCGAAAATTGATTCCTCTCCAGGGTCACTACAAACTGGAAATGGTCCTCTGATGGATAAGTTGGATGGCAACACCTCGGGATTTTATATTCCGCAACCCTATTCTGATTATCTATCAGAAATTCAGACAGATGCTTACAGTGATAATAATGGAGGTATTAATATGATCGACTCTCAAAAAACACTTGGTTCGGCATCTTGGGAAGAGATCTTCAAACAATCTATGACAGATATACCATCCCATGATTCAACTCTTGGACAACAAAATATGATTCCAGGCAAATTAATGGGCAATACTGCCGTCAAGGAGTATGGGCTCCCATGGCAGATTCCTCTTGAAGACTTCCCAGAGGGATCAGGGGACCAGTTGTCAGATTTAGAATCTTTGTATGAAATAAGTAACAGGTTATCTGAGCAAGGAAATCATGATGATATTTATGGAAGTAAGCTTAGTATAAGTAATACTCATCCTGATATGCAAAATCATCAACCGTTACCAAATGACCTCCATATACAGCTTACCAATGATGAATCTCAATTCCCGATGAAATGGAGTTCTGAGAATGATATCCCTGTCAAAGGAAATTTGCCCTACCCTTTGGCCTTCAAACAGTCATTACTTGATGGAGAAGAAGGTTTGAAGAAGGTGGACAGCTTCTCTAGGTGGGTAAGTAAAGAACTTAAAGAACTTGGGGAGGTAGATGATTTGCGTATGGAGTCATCATCTGGTATTTCTTGGACCACTGTTGACTGTGGAGATATTGTTGGTGATTCATCATTGAGCCCCTCTCTTTCTCAAGACCAACTTTTCAGTATAAGCAGTTTTTCACCAAAGTGGACATACATGGACTCAGAAGCTGAGGTTCTGATTATAGGAAGATATTTGGGGGCTCAACAAATTGTTGCTATCAACTGGTCCTGTATGTTTGGGGAAGTAGAAGTTCCTGCCGAGGTTTTGGCTGATGGAATTCTTTGTTGCCGTGCTCCACCTCATAGTGTAGGGCAAGTCCCTTTTTACATAACATGCTCCAATAGAGTAGCTTGCAGTGAAGTTCGAGAATTTGAGTACCTAGCTGGCCCAACCAAAGATATAGATGTGAAAGATATTTATAATGGCGCTTCATATGAAATGCTTCTGCATATGCAACTTGTCAGATTACTGTCTTCAACATTTGTCAACGCTTCAAGAAACCTCTTTGAAGGTGCTTTGGAGAAACACAATTTAATCATTAAACTCATTGCATTAAATGAGGAAGAAGATTGCTATAGAGAAGAAGCAAACATTCAGAAAGATTCAATGCAGAATGAATGGAAAAAGTCTCTTTTTGAAAAGGCAATAAAAGAAAAGTTGTATTCATGGCTTTTTCGAAAGATAACTGAAGACAGTAAAGGGCCTAACATGTTGGATGACAAGGGGCAAGGGGTACTTCATTTGGCAGCTGCTCTTGGTTATGACTGGGCCTTGAAACCAATTGTGACTGCAGGAGTTAGTATCAATTTTCGCGATGATAATGGATGGACAGCTCTTCATTGGGCAGCATTCTGTGGCAGAGAGCAGACAATTGCGGTCCTAATCTCTCTGGGTGCGGCTACTGGGGTATTGACAGATCCATCTCCAGATCATCCTTTAGGTAGAACACCAGCAGACCTTGCATCCTCCAACGGGCACAAAGGAATCTCTGGTTTCCTAGCAGAGTCTTCATTGACCAGCTATCTCGAATCTCTAAAAATGACCGATACAAAGGAAGATAGCACCTTAGAAGCTTCAACCCCAAAACCTGTACAAACGGTTTCAGACAGGATGCCAACACCTATCGTTGGTGGTTATAATCCATATGAGCTGTCACTCAAGGATTCACTTACTGCCATCTGTAACGCTACACAGGCTGCTGGTCGTATATATCAGATGTTCAGGATCCAGTCGTTCCAGAGGAAACAACTGACAGAGAAGAATGGAGATGATGAATTTGAGAAACAGGCTTCTTTGGGCATTTCTGCTCGAGTCCGTAAGCCCGGACAAGGCTATGGACATGTCCAAGCTGCCGCTGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAAAGAGAAAAGAATTTCTCATTATTCGTCAAAGAATCGTTAAAATTCAGGCCCATATAAGGGGACACCAGGTAAGGAAGCAATATAGAACGATCATCTGGTCAGTAGGCATTCTGGAAAAGATTATATTGCGATGGAGACGTAAAGGGAGTGGATTACGGGGCTTCAAACCAGATGGAATTAGTAAGGAACCCAACCCAGAGACCAAGCGAGATGCACTTACTAAAGATAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGAAGACAAACAGAGGAGAGGTTGCAAAAGGCGCTCACTAGGGTTAAGTCTATGGCTCAATATCCAGAAGGACGTGATCAATACCGTAGGCTACTTACCGTTGTTCAAGGCTTCCGTGAAACAAAGGTGTCGGGTATGGCTATTACTAGTCTGGATCAGGAAATTCCATATGGAAATGATGATGAGGACCTGATCGATTACGACACACTCCTGGATGATGACACTCTAATGTCCATAACATTTGATTTAAAAGAGTGA 3198 41.62 MAERGSYGLGPRLDIKQLQIEAQNRWLRPAEVREILCNYQKFHIASEPPKRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEENLTHIVFVHYLQVKGNRTYTRSAKETDEVSSTSSIGGPSSSSSPTSHTRATFGNVDPPSPSSTMTSLYEDVDSDHQATSKIDSSPGSLQTGNGPLMDKLDGNTSGFYIPQPYSDYLSEIQTDAYSDNNGGINMIDSQKTLGSASWEEIFKQSMTDIPSHDSTLGQQNMIPGKLMGNTAVKEYGLPWQIPLEDFPEGSGDQLSDLESLYEISNRLSEQGNHDDIYGSKLSISNTHPDMQNHQPLPNDLHIQLTNDESQFPMKWSSENDIPVKGNLPYPLAFKQSLLDGEEGLKKVDSFSRWVSKELKELGEVDDLRMESSSGISWTTVDCGDIVGDSSLSPSLSQDQLFSISSFSPKWTYMDSEAEVLIIGRYLGAQQIVAINWSCMFGEVEVPAEVLADGILCCRAPPHSVGQVPFYITCSNRVACSEVREFEYLAGPTKDIDVKDIYNGASYEMLLHMQLVRLLSSTFVNASRNLFEGALEKHNLIIKLIALNEEEDCYREEANIQKDSMQNEWKKSLFEKAIKEKLYSWLFRKITEDSKGPNMLDDKGQGVLHLAAALGYDWALKPIVTAGVSINFRDDNGWTALHWAAFCGREQTIAVLISLGAATGVLTDPSPDHPLGRTPADLASSNGHKGISGFLAESSLTSYLESLKMTDTKEDSTLEASTPKPVQTVSDRMPTPIVGGYNPYELSLKDSLTAICNATQAAGRIYQMFRIQSFQRKQLTEKNGDDEFEKQASLGISARVRKPGQGYGHVQAAAVHIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYRTIIWSVGILEKIILRWRRKGSGLRGFKPDGISKEPNPETKRDALTKDKEDDYDFLKEGRRQTEERLQKALTRVKSMAQYPEGRDQYRRLLTVVQGFRETKVSGMAITSLDQEIPYGNDDEDLIDYDTLLDDDTLMSITFDLKE 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9380148 9387399 + Conep08aG0103300.1 Cone8ag1005 443554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 143 213 - -
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 143 218 - -
Cone8ag1005 1065 SMART ANK_2a 743 772 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 SMART ANK_2a 671 700 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 SMART ANK_2a 704 733 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 Pfam Ankyrin repeats (3 copies) 676 765 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Coils Coil 974 994 - -
Cone8ag1005 1065 FunFam Calmodulin-binding transcription activator 2 877 925 - -
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Gene3D - 877 925 - -
Cone8ag1005 1065 Gene3D - 626 774 IPR036770 -
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat region circular profile. 704 729 - -
Cone8ag1005 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1021 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone8ag1005 1065 CDD IPT 471 557 - -
Cone8ag1005 1065 SUPERFAMILY Ankyrin repeat 662 765 IPR036770 -
Cone8ag1005 1065 SUPERFAMILY E set domains 472 556 IPR014756 -
Cone8ag1005 1065 ProSiteProfiles IQ motif profile. 879 907 - -
Cone8ag1005 1065 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam IPT/TIG domain 471 544 IPR002909 -
Cone8ag1005 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 928 IPR027417 -
Cone8ag1005 1065 Pfam IQ calmodulin-binding motif 903 922 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 Pfam IQ calmodulin-binding motif 880 898 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 SMART iq_5 877 899 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 SMART iq_5 900 922 IPR000048 GO:0005515(InterPro)
Cone8ag1005 1065 FunFam Calmodulin-binding transcription activator 2 465 560 - -
Cone8ag1005 1065 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cone8ag1005 1065 Gene3D Immunoglobulins 465 562 IPR013783 -
Cone8ag1005 1065 ProSiteProfiles IQ motif profile. 901 925 - -
Cone8ag1005 1065 MobiDBLite consensus disorder prediction 782 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1005 K21596 - - csv:101203707 1258.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0227 Cone-Chr8:1250902 Cone8ag1005 Cone-Chr8:9380148 2.77E-227 dispersed
Cone12ag0971 Cone-Chr12:8367766 Cone8ag1005 Cone-Chr8:9380148 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone12ag0971 . 1 1056 CAMTA Transcription Factor Family AT5G64220 54.4 2.6e-279 959.1
Cone8ag1005 . 1 1062 CAMTA Transcription Factor Family AT5G64220 53.4 4.4e-271 931.8
Cone14ag0610 . 6 944 CAMTA Transcription Factor Family AT1G67310 53.6 2.0e-265 912.9
Cone15ag0616 . 6 971 CAMTA Transcription Factor Family AT1G67310 51.7 6.6e-264 907.9
Cone14ag0727 . 1 602 CAMTA Transcription Factor Family AT4G16150 52.4 2.0e-182 637.1
Cone14ag0727 . 1 875 CAMTA Transcription Factor Family AT3G16940 52.6 6.1e-252 867.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46698 PF04564 U-box 4.40E-17 CL0229 Cone TF