Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1012 ATGGATCCTGAGATCGCGAAAACTCAGGAAGAGCGTAAGAAATTAGAGCAGCAATTGGCCGCGCTCACCTCTGTGACATTCGATACTGACCTCTATGGCAGCAACGATAGGGATGGTTACGTCACCTCCATCCCTGTCAACGAGGATGATGAGAATCTTGATTCCATGGATAATGAGGTTGCTCGAAAGTTGGCATCCTACACTGCTCCAAAATCCTTGCTGAAGGAGAGGCCAAGAGGTGGCGATGAAGATGAGGATTTAGGGTTTAAGAAGCCGCAGAGGATTATTGACAGAGAGGATGATTATAGGAAGCGGAGGCTGAATCGAGTGATTTCTCCTGACCGGCACGATGCCTTTGTGGCAGGGGAGAAGACACCTGATCCGTCAGTAAGGACTTATGCTGATGTAATGAGGGAGGAGGCTTTGAAAAGGGAGAAGGAGGAGACGTTGAGGCTTATTGCTAAGAAGAAGAAAGAGGAGGAGGAGGCTGCTAAGGAAGCTGGTGAGAAACCAAAGGAATCAGCTGCTCCGGTTCCAGCTCCAGCTCCTCAGAAGAGAAGGAATAGGTGGGACCAATCTCAGGACGATGGTGAGGCCAAGAAGGCTAAAACTTCAGATTGGGATATGCCCGACACTACTCCGGGTAGGTGGGATGCGACTCCGGGCAGAGTAGGGGATGCTACCCCAGGGATGGGAAGGAGGAACAGGTGGGATGAGACCCCAACTCCGGGCAGAGTGGCCGATTCAGATGCCACTCCAGCCGGTGGTGTTACTCCGGGTGCAACTCCAGCCGGAATGACATGGGATGCTACCCCAAAGCTTGCCGGACTTGCTACACCTACTCCAAAAAGGCAAAGGTCTAGATGGGATGAGACTCCGGTCACAATGGGCAGTGCAACCCCCATGGCAGGAGCTACTCCGGCAGCTGCATATACACCTGGAGTGACTCCTGTTGGAGGGGTTGAACTTGCTACCCCGACTCCAGGTGCAATCAATTTGCGGGGCCCAGTGACACCCGAGCAATATAATTTGATGAGGTGGGAGAAAGATATTGAGGAGAGGAATCGCCCGTTGACTGATGAAGAGCTTGATGCTATGTTTCCACAAGAAGGGTACAAGATATTGGAGCCCCCAGCTTCTTATGTTCCTATTAGAACACCTGCTAGGAAATTACTAGCTACACCAACGCCTATGGGAACCCCTCTTTATTCTATTCCGGAGGAGAACCGTGGGCAACAATTTGATGTGCCGAAAGAAGCACCTGGTGGGTTGCCGTTTATGAAGCCTGAGGATTACCAGTATTTTGGGGCATTGTTGAATGAAGAAGAGGAGGAGGGGTTGTCACCTGAGGAACAGAAGGAGCGGAAGATTATGAAGCTTTTGCTCAAGGTTAAAAATGGTACTCCTCCTCAGAGGAAAACAGCTTTGAGACAGCTCACTGATAAAGCTCGTGATTTTGGTGCCGGTCCATTGTTTAATCGCATTCTGCCATTGCTTATGCAACCCACTTTGGAGGATCAAGAGAGGCATCTTTTGGTAAAAGTTATTGATAGAGTGCTTTATAAATTGGATGAGTTGGTTCGTCCCTATGTGCACAAGATACTTGTTGTTATCGAGCCGCTATTGATTGATGAAGATTATTATGCTCGTGTTGAAGGTAGAGAAATCATTTCTAATCTCAGTAAAGCAGCCGGGTTGGCTACTATGATAGCTGCCATGCGTCCTGATATTGACAACATTGATGAATATGTTAGAAATACCACCGCTCGAGCTTTCAGTGTTGTTGCCTCTGCTCTTGGGATTCCAGCTCTTCTTCCTTTTCTCAAAGCCGTGTGTCAGAGTAAAAAATCGTGGCAAGCTAGACATACCGGAATCAAAATTGTCCAGCAGATTGCTATTCTGATTGGCTGTGCTGTTTTACCCCATCTTAGATCTCTTGTGGAGATCATAGAACATGGTCTGAACGATGAGAATCAGAAAGTGAGAACAATCACTGCTCTGTCTCTGGCGGCTCTTGCAGAGGCTGCTGCCCCCTATGGTATTGAAAGCTTCGACACAGTCTTGAAGCCTCTGTGGAAAGGTATCAGGTCCCACCGTGGTAAGGTCCTTGCTGCCTTCTTGAAGGCAATTGGGTTTATTATTCCTTTGATGGATGCTGTTTATGCTAGCTACTATACAAGGGAAGTGATGCATGTTCTGATTCGTGAATTTCAATCACCTGATGAAGAAATGAAGAAGATTGTATTGAAAGTGGTTAAGCAGTGTGTTAGCACTGAGGGGGTAGATGCAGAGTACATTAGAAATGATATCCTTCCAGAGTTTTTCAGAAACTTTTGGGTTAGAAGGATGGCTTTGGATAGGAGAAACTATAGGCAGCTTGTGGACACTACTGTAGAGATAGCTAACAAAGTTGGTGTTGCTGATATAGTAGGGAGAATAGTAGAGGATCTCAAGGATGAGAGTGAACCTTATAGGCGAATGGTTATGGAAACAATTGAGAAGGTGGTAACAAATCTAGGTGCTTCTGATATAGATGCCCGTTTGGAAGAGCTTCTAATTGATGGGATTCTATATGCATTCCAAGAGCAAACCAGTGATGATGCTAATGTGATGCTTAATGGGTTTGGAGCAGTTGTTAATTCTCTCGGGCAGAGAGTGAAACCTTACCTTCCTCAGATTTGTGGTACGATAAAATGGCGTCTGAATAACAAGAGTGCTAAGGTGAGACAGCAAGCAGCAGATCTTATCTCAAGGATCGCTGTAATTATGAAGCAATGCCAAGAAGAACAGCTCATGGGTCATCTTGGCGTTGTCTTGTACGAGTATTTAGGAGAAGAATACCCAGAAGTTCTTGGATCTATTCTAGGAGCACTCAAGGCAATTGTCAATGTCATTGGTATGACAAAGATGACACCTCCTATTAAAGATCTGCTCCCTAGATTAACTCCCATTTTGAAAAACAGGCACGAAAAGGTCCAAGAGAACTGTATAGACCTTGTGGGCAGAATTGCTGATCGTGGGGCCGAGTTTGTACCAGCCAGGGAGTGGATGAGGATCTGCTTTGAGCTCCTTGAAATGCTAAAGGCTCACAAGAAGGGCATTCGTCGAGCCACAGTGAACACATTTGGCTATATAGCTAAAGCCATTGGCCCACAAGATGTCCTGGCCACTCTCCTAAACAACCTTAAGGTCCAAGAACGTCAAAACCGTGTCTGCACAACTGTGGCTATAGCCATAGTAGCAGAAACCTGTTCGCCTTTTACTGTCTTACCAGCTTTAATGAATGAATATAGAGTCCCCGAGCTAAACGTCCAAAACGGTGTTTTAAAATCTCTCTCTTTCTTGTTTGAGTACATTGGTGAAATGGGTAAGGACTATATCTATGCAGTGACTCCATTGCTGGAAGATGCTTTAATGGATCGGGATCTGGTTCACAGGCAAACAGCAGCTTCTGCTGTTAAGCACATGGCTTTAGGTGTGGCTGGATTGGGCTGTGAAGATGCTTTGGTCCACTTGTTGAACTATGTGTGGCCTAATATATTTGAGACCTCCCCTCATGTTATAAATGCTGTCATGGAAGCCATTGAAGGGATGAGAGTAGCTTTGGGTGCTGCCATCGTGCTTAACTACTGTCTTCAGGGTCTGTTCCATCCTGCCCGGAAAGTAAGGGAGGTTTACTGGAAGATTTATAATTCCTTGTATATTGGTTCTCAGGATGCTCTTGTGGCGGCTTATCCTACTTTGGAGGATGAGCATCATAATGTATACAGCAGGCCGGAAAAGGATCCTGATCACTTTCCAGTCTCTGCCATGGGCTTGAACTCGGAGACTCCGGATAATCCTCCAGGTTCCGTCAAGGCCTTGGCCGCGTTTCTAATTCGACGCCACTCCGACCAGCTCCGATCAATCGCTCTCTCCCCTGACTCGAAACTCCATTATCCTCTCTTCGTTGATTTTGCTGAGCTGATGGACGACGATCCTTCTCTTGCGCGACTCATCTTCTCACAACCTACTGATTACTTGCGCTTATTTGACGATGCTGCGATTTGGGCTCATAAAATTATATTGGGGGACTTGAAAGGAAGCGATGAAGAAATTAAGAAGGATTTCATCCACGTTCGTATCAACATTAGCGGTTCTCCTCTAGAATGCCCTGAGACTTTTCCCGGCATTGGATCCGTGAGAGTGAAGCACCGTGGGATTCTTCTCACACTCAAAGGCACAGTGATTAGGTCAGGAGCAATCAAGATGTTGGAAGGGGAGAGATGGTTTATGTGCAGGAAATGCAAGCACAAGTTTCCAGTTTATCCAGAGTTAGAAACTAGAAACTCTATACCACTACCATCATTTTGCCCCTCTCAGACTAAGAGCTGTGAAGGTAAATATTTTGAGTGCCTGGAAGGTTCTATAGTACGCCACGATTATCAAGAAATCAAAATTCAGGAAAATACACAACTATTAGGTGTTGGGTCCATCCCTCGATCAATTCCTATCATTCTGAAGGATGATCTTGTTGATATTGTTAAAGCTGGAGATGATGTTATAGTAACCGGGATCTTAAGCGCAAAGTGGTCTCCAGACTTGAAAGATGTGCGGTGCGACCTTGATCCCATGTTAATTGCTAATCATATCAGGAGAACGAATGAGCGGAAGTCAGACATTGATATCCCTGATGATGTTAGAATGGAGTTCAAGAAATTTTGGTTGGATTTCAAAGATGCTCCATTACAAGGGAGAAATGCCATTCTAAAAGGTATATGCCCTCAAGTGTTTGGACTCTTTACTGTAAAACTTGCAGTTGCATTAACCCTTATTGGAGGTGTTCAACATGTCGACACCTCTGGCACCAAAGTTCGAGGAGAATCTCATTTGCTTTTGGTTGGTGATCCAGGAACTGGAAAGTCGCAGTTTTTAAAATTTGCTGCGAAATTAAGCAACCGATCAGTTATTACTACTGGGTTAGGAAGCACTAGTGCTGGTCTAACTGTTGCTGCTGTCAAGGATGGAGGAGAATGGATGTTGGAAGCTGGAGCACTTGTTCTAGCAGATGGAGGGCTCTGCTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGGGCGACCATACACGAAGCAATGGAGCAGCAGACTATAAGTGTTGCCAAGGCTGGACTCGTTACAACTCTTAATACCAGGACAGCAGTATTCGGTGCTACAAATCCTAAAGGACATTACGATCCTGATCAACCTCTGTCCGTCAATACAACACTCTCTGGTCCGTTATTGAGCAGATTCGACATCGTTCTTGTCCTCTTAGACACAAAGAATCCTGAATGGGATGCGGTTGTTTCATCTCACATACTCTCTGAGGCTGAATCAGAGAAAGGGAAGCTCAAAGAAGACATATCGAATAAATGGCCACTTCCTATGCTCCGGAGGTATATTCAATTCGTAAAAGGATTCTTCAGACCAGTCCTGACCAAAGATGCAGAAAAGATAATATCGAACTATTATCAGCTCCAAAGAAGATCAGCAACTGATAATGCAGCTAGAACAACCGTACGCATGCTTGAAAGTTTGATACGCCTTGCTCAAGCTCATGCGAGGCTTATGTTTAGGAACGAGGTAACTAGATTAGATGCTATTACGGCCATTTTATGCATCGAATCATCCATGACTACTTCAGCTATAGTGGACAGTGTTGGGAATGCTCTGCACTCCAATTTTGCTGAGAACCCAGATGAGGAATGTATCCTTTCTGGTTAA 5748 45.49 MDPEIAKTQEERKKLEQQLAALTSVTFDTDLYGSNDRDGYVTSIPVNEDDENLDSMDNEVARKLASYTAPKSLLKERPRGGDEDEDLGFKKPQRIIDREDDYRKRRLNRVISPDRHDAFVAGEKTPDPSVRTYADVMREEALKREKEETLRLIAKKKKEEEEAAKEAGEKPKESAAPVPAPAPQKRRNRWDQSQDDGEAKKAKTSDWDMPDTTPGRWDATPGRVGDATPGMGRRNRWDETPTPGRVADSDATPAGGVTPGATPAGMTWDATPKLAGLATPTPKRQRSRWDETPVTMGSATPMAGATPAAAYTPGVTPVGGVELATPTPGAINLRGPVTPEQYNLMRWEKDIEERNRPLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPMGTPLYSIPEENRGQQFDVPKEAPGGLPFMKPEDYQYFGALLNEEEEEGLSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKARDFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDTVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAVYASYYTREVMHVLIREFQSPDEEMKKIVLKVVKQCVSTEGVDAEYIRNDILPEFFRNFWVRRMALDRRNYRQLVDTTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVIMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAIVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPTLEDEHHNVYSRPEKDPDHFPVSAMGLNSETPDNPPGSVKALAAFLIRRHSDQLRSIALSPDSKLHYPLFVDFAELMDDDPSLARLIFSQPTDYLRLFDDAAIWAHKIILGDLKGSDEEIKKDFIHVRINISGSPLECPETFPGIGSVRVKHRGILLTLKGTVIRSGAIKMLEGERWFMCRKCKHKFPVYPELETRNSIPLPSFCPSQTKSCEGKYFECLEGSIVRHDYQEIKIQENTQLLGVGSIPRSIPIILKDDLVDIVKAGDDVIVTGILSAKWSPDLKDVRCDLDPMLIANHIRRTNERKSDIDIPDDVRMEFKKFWLDFKDAPLQGRNAILKGICPQVFGLFTVKLAVALTLIGGVQHVDTSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLNTRTAVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAESEKGKLKEDISNKWPLPMLRRYIQFVKGFFRPVLTKDAEKIISNYYQLQRRSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFAENPDEECILSG 1915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9415074 9423776 + Conep08aG0104000.1 Cone8ag1012 443561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 30 53 - -
Cone8ag1012 1915 ProSiteProfiles MCM family domain profile. 1578 1781 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 Gene3D - 1393 1522 IPR012340 -
Cone8ag1012 1915 FunFam Probable DNA helicase MCM9 1556 1890 - -
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 71 93 - -
Cone8ag1012 1915 CDD MCM9 1581 1885 - -
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 155 172 - -
Cone8ag1012 1915 Pfam MCM OB domain 1394 1522 IPR033762 -
Cone8ag1012 1915 SMART mcm 1387 1887 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 FunFam Splicing factor 3b, subunit 1 452 787 - -
Cone8ag1012 1915 SUPERFAMILY Nucleic acid-binding proteins 1312 1529 IPR012340 -
Cone8ag1012 1915 Coils Coil 139 170 - -
Cone8ag1012 1915 SMART TOG_3 842 1077 IPR034085 -
Cone8ag1012 1915 Gene3D - 1083 1251 IPR011989 -
Cone8ag1012 1915 Pfam Splicing factor 3B subunit 1 280 410 IPR015016 -
Cone8ag1012 1915 Gene3D - 1418 1473 - -
Cone8ag1012 1915 ProSiteProfiles HEAT repeat profile. 646 684 IPR021133 -
Cone8ag1012 1915 PANTHER SPLICING FACTOR 3B, SUBUNIT 1-RELATED 9 1260 IPR038737 GO:0000245(PANTHER)|GO:0000245(InterPro)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005686(PANTHER)|GO:0005689(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 188 207 - -
Cone8ag1012 1915 FunFam Splicing factor 3B subunit 1 1086 1254 - -
Cone8ag1012 1915 FunFam Splicing factor 3B subunit 1 788 1076 - -
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 155 269 - -
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 276 295 - -
Cone8ag1012 1915 SMART AAA_5 1620 1769 IPR003593 GO:0016887(InterPro)
Cone8ag1012 1915 Gene3D - 450 789 IPR011989 -
Cone8ag1012 1915 Gene3D - 790 1082 IPR011989 -
Cone8ag1012 1915 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1755 1763 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1677 1691 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1619 1634 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1705 1718 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 Pfam PPP2R1A-like HEAT repeat 1047 1119 IPR054573 -
Cone8ag1012 1915 Pfam MCM P-loop domain 1580 1783 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone8ag1012 1915 SUPERFAMILY ARM repeat 460 1252 IPR016024 -
Cone8ag1012 1915 Gene3D - 1569 1891 IPR027417 -
Cone8ag1012 1915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1588 1888 IPR027417 -
Cone8ag1012 1915 MobiDBLite consensus disorder prediction 75 93 - -
Cone8ag1012 1915 Pfam MCM AAA-lid domain 1804 1885 IPR041562 -
Cone8ag1012 1915 Coils Coil 5 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0446 Cone-Chr16:6781760 Cone8ag1012 Cone-Chr8:9415074 1.66E-67 dispersed
Cone8ag1012 Cone-Chr8:9415074 Cone9ag0904 Cone-Chr9:4438074 5.62E-61 dispersed
Cone12ag0982 Cone-Chr12:8412224 Cone8ag1012 Cone-Chr8:9415074 1.28E-294 transposed
Cone12ag0981 Cone-Chr12:8407651 Cone8ag1012 Cone-Chr8:9415074 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1012 K12828 - csv:101213260 2319.66