Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1033 ATGTTGAAGTTATCGATCGAACGAGTGAAGAATTTGAAGGCTCTGAGGCCTCAGATCGGTGCTTTCGGAAATCGTCGTTTCTCTACGGCAGCAGAGCCATCTTCGGGCGAAAGTAACGCTCCGAGGGTTCCAAATCTTATTGGAGGGAGTTTCGTTGATTCTCAGTCAACAGGATTCATTGATGTTATAAACCCAGCAACACAAGAAGTAGTTTCGAAAGTTCCATTGAGTACAAGTGAAGAGTTCAAGGCTGCAGTATCTGCAGCAAAACTGGCCTTTTCATCATGGCGTAATACTCCAGTTACAACACGTCAGCGAATTATGCTCAAGCTTCAAGAGCTGATTCGACGAGACATAGATAAGATTGCCCTGAATATTACAACTGAACAAGGAAAAACACTGAAGGATGCACATGGAGATGTGTTCCGAGGGCTAGAAGTTGTGGAACATGCTTGTGGAATGGCAACTCTGCAAATGGGGGAATACGTTTCCAATGTGTCTCATGGAATTGATACCTACAGCATTAGAGAGCCTCTTGGTGTTTGTGCTGGAATTTGTCCTTTCAACTTTCCCGCAATGATTCCATTATGGATGTTCCCTGTTGCTGTTACGTGTGGCAATACCTTTATTCTAAAGCCATCAGAAAAAGATCCAGGGGCTTCCGTAATGCTTGCGGAGTTAGCAATGGAGGCTGGGCTGCCAAATGGTGTCCTAAACATTGTTCACGGTACACATGACATAGTGAATGCTATTTGTGATGATGAAGATATAAGAGCTGTGTCATTTGTTGGTTCTAATACTGCGGGAATGCATATATATTCCAGAGCTGCAGCTAAAGGGAAACGTGTTCAGTCCAACATGGGAGCCAAAAATCATGCAATCGTCTTACCTGATGCAAACATAGATGCAACTTTGAATGCATTAGTTGCAGCTGGATTTGGTGCTGCGGGACAAAGATGCATGGCACTCAGCACTGTTGTTTTTGTCGGAGACTCACAGTCATGGGAGAATAAACTTCTGGAGCGTGCAAAAGCTCTGCAGGTAAGTGCTGGTACAGAACCTGACACAGATCTTGGTCCAGTAATCAGCAAACAGGCAAAAGAAAGAATTTGCAGATTGATTCAATCTGGCGTTGAAAGTGGAGCCAGGCTGTTGCTTGATGGGAGAACTATAAAGGTTCCAGGATATGAGCATGGAAACTTTATTGGCCCCACCATCTTATCGGATGTCATAGACAATATGGAGTGTTACAGAGAAGAGATTTTTGGCCCAGTTCTTCTTTGCATGAAGGCTGACAGCTTAGAAGAAGCTATAAACATTGTCAACAAAAACAAGTATGGCAATGGAGCATCTATATTCACTTCATCAGGGGTGGCTGCAAGGAAGTTCCAGACTGATATCGAGGCTGGTCAGGTCGGGATCAATGTACCTATTCCAGTACCCTTGCCATTTTTCTCATTTACTGGATCCAAGGCTTCTTTTGCTGGTGACCTCAACTTTTATGGTAAAGCTGGAGTTAATTTCTGTACCCAGATAAAAACAGTAACCCAGCAATGGAAGGACTTACCTGGAGGCACTGGAGTCAACCTTGCGATGCCAACTTCACTTAAGTCATAG 1617 43.97 MLKLSIERVKNLKALRPQIGAFGNRRFSTAAEPSSGESNAPRVPNLIGGSFVDSQSTGFIDVINPATQEVVSKVPLSTSEEFKAAVSAAKLAFSSWRNTPVTTRQRIMLKLQELIRRDIDKIALNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVMLAELAMEAGLPNGVLNIVHGTHDIVNAICDDEDIRAVSFVGSNTAGMHIYSRAAAKGKRVQSNMGAKNHAIVLPDANIDATLNALVAAGFGAAGQRCMALSTVVFVGDSQSWENKLLERAKALQVSAGTEPDTDLGPVISKQAKERICRLIQSGVESGARLLLDGRTIKVPGYEHGNFIGPTILSDVIDNMECYREEIFGPVLLCMKADSLEEAINIVNKNKYGNGASIFTSSGVAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFCTQIKTVTQQWKDLPGGTGVNLAMPTSLKS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9552255 9558443 - Conep08aG0106100.1 Cone8ag1033 443582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1033 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 7 535 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cone8ag1033 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491(InterPro)
Cone8ag1033 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620(InterPro)
Cone8ag1033 538 SUPERFAMILY ALDH-like 41 521 IPR016161 GO:0016491(InterPro)
Cone8ag1033 538 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
Cone8ag1033 538 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Cone8ag1033 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491(InterPro)
Cone8ag1033 538 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491(InterPro)
Cone8ag1033 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491(InterPro)
Cone8ag1033 538 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1033 K00140 - - vvi:100266351 939.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1516 Cone-Chr6:11972388 Cone8ag1033 Cone-Chr8:9552255 3.97E-226 dispersed
Cone8ag0655 Cone-Chr8:6514282 Cone8ag1033 Cone-Chr8:9552255 1.50E-58 dispersed
Cone12ag1005 Cone-Chr12:8514370 Cone8ag1033 Cone-Chr8:9552255 0 wgd
Cone8ag1033 Cone-Chr8:9552255 Cone9ag1436 Cone-Chr9:10678811 1.51E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0693 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 74.2 9.3e-219 756.9
Cone4ag0719 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 73.4 5.6e-216 747.7
Cone16ag0751 . 9 506 Aldehyde Dehydrogenase Gene Family AT3G24503 69.5 6.2e-207 717.6
Cone8ag0655 . 54 538 Aldehyde Dehydrogenase Gene Family AT3G24503 55.8 1.7e-159 560.1
Cone13ag0133 . 60 544 Aldehyde Dehydrogenase Gene Family AT3G24503 54.9 1.1e-155 547.4
Cone12ag0631 . 24 508 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 1.5e-155 547.0
Cone13ag0133 . 1 544 Aldehyde Dehydrogenase Gene Family AT3G48000 79.3 3.2e-257 884.8
Cone8ag0655 . 1 538 Aldehyde Dehydrogenase Gene Family AT3G48000 76.9 4.9e-250 860.9
Cone12ag0631 . 7 508 Aldehyde Dehydrogenase Gene Family AT3G48000 78.5 4.4e-243 837.8
Cone7ag0693 . 6 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 6.8e-167 584.7
Cone4ag0719 . 6 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.3 7.5e-166 581.3
Cone16ag0751 . 22 506 Aldehyde Dehydrogenase Gene Family AT3G48000 56.1 3.5e-163 572.4
Cone8ag0655 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 79.6 2.7e-176 615.5
Cone12ag0631 . 7 352 Aldehyde Dehydrogenase Gene Family AT1G23800 82.4 1.2e-171 600.1
Cone13ag0133 . 3 388 Aldehyde Dehydrogenase Gene Family AT1G23800 75.1 1.0e-167 587.0
Cone7ag0693 . 16 346 Aldehyde Dehydrogenase Gene Family AT1G23800 57.4 6.6e-106 381.7
Cone4ag0719 . 16 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.0e-103 372.5
Cone16ag0751 . 22 350 Aldehyde Dehydrogenase Gene Family AT1G23800 56.5 2.6e-102 369.8
Cone6ag1237 . 115 598 Aldehyde Dehydrogenase Gene Family AT4G34240 66.5 9.0e-188 654.1
Cone4ag1417 . 1 484 Aldehyde Dehydrogenase Gene Family AT4G34240 64.9 5.7e-182 634.8
Cone7ag1521 . 1 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 3.7e-181 632.1
Cone7ag1521 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 74.0 9.3e-180 627.1
Cone4ag1417 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 73.2 3.0e-178 622.1
Cone6ag1237 . 190 596 Aldehyde Dehydrogenase Gene Family AT1G44170 66.6 2.2e-160 562.8
Cone6ag1661 . 5 479 Aldehyde Dehydrogenase Gene Family AT4G36250 64.4 4.6e-183 638.3
Cone5ag1440 . 11 461 Aldehyde Dehydrogenase Gene Family AT4G36250 51.6 1.4e-142 503.8
Cone1ag0445 . 1 161 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 3.0e-49 193.7
Cone10ag1447 . 9 519 Aldehyde Dehydrogenase Gene Family AT1G79440 77.3 5.7e-235 810.8
Cone12ag1005 . 11 503 Aldehyde Dehydrogenase Gene Family AT2G14170 83.0 3.3e-239 825.1
Cone8ag1033 . 11 503 Aldehyde Dehydrogenase Gene Family AT2G14170 83.0 2.1e-238 822.4
Cone6ag1516 . 211 642 Aldehyde Dehydrogenase Gene Family AT2G14170 65.3 2.6e-175 612.8
Cone9ag1436 . 142 371 Aldehyde Dehydrogenase Gene Family AT2G14170 65.7 4.5e-87 319.7
Cone19ag0120 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 7.2e-248 853.6
Cone13ag0118 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.2 2.3e-246 848.6
Cone19ag0120 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 78.3 8.9e-246 846.7
Cone13ag0118 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 77.7 9.9e-245 843.2
Cone4ag0605 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.7 5.0e-265 910.6
Cone17ag0988 . 33 528 Aldehyde Dehydrogenase Gene Family AT2G24270 86.3 5.4e-259 890.6
Cone7ag0586 . 4 314 Aldehyde Dehydrogenase Gene Family AT2G24270 83.0 1.7e-148 523.5
Cone16ag0152 . 1 554 Aldehyde Dehydrogenase Gene Family AT5G62530 81.9 1.2e-278 956.1
Cone14ag0722 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 83.8 4.1e-298 1020.8
Cone15ag0731 . 1 599 Aldehyde Dehydrogenase Gene Family AT3G66658 82.1 1.0e-296 1016.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40