Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1038 ATGGAAAATTATTCCTTCAACTACTCTTCCTACCCAGAATCCGGCGACTCCTCTCCTCGCTCTCGCGAAATCGACTTCGATAATCCTCCTCCATGGGACGAGCACAGCAACAACAACAACAACTACAAGGTCAAGTTCATGTCCAGCTATGGCGGCAAGATTCAACCCCGTCCTCACGATAATCAGCTCTCCTACGTCGGTGGCGACACCAAGATCCTCGCTGTCGATCGCTCCATCAAATTCTCCTCGCTCTTGGCTAGACTCTCTTCCATCTCCGACTCTGACGTCACCTTCAAGTACCAGCTCCCTGGCGAAGATCTCGACGCTCTCATTTCGGTTACGAATGATGACGATCTCGACCACATGATGCACGAGTACGATCGCCTCTATCGTGGCTCTGTTAAGCCTGCTCGGATGCGTCTCTTTCTCTTTCCGGTTAATTCTACTCCTGGATTTGCTTCTTCCGCCGACGAAGTCCGGTCTGACCGGGAGCGGTTCGTCGATGCGTTGAATTCCGGTCCTGCTAATCCAGCTGAGGCAACTAAGCCTTCTACTCCTATTAATAATCACGATTTCCTATTCGGTTTGGAGAAAGGATCCGTTCCCCCGCCTATGCCGGTGGCTGAACAGAAACTCCACGATACCGTGCCGGAAAAGGCTGCTCCGCCTACTGAGTTCGCGACTGGACCTGGACAGGCTGATCGGCACCAAATCGACATGCAGAGGCAGTTACAGGAATTACAGAGGCTACAAATCGCTGAACATGACCAAGCTATGTACAGAAGATCAAGGAACGATGAAATTAATCAAGTCGGAGGCTACGGCGCAGCCGGAGATTATTACATGCACAAGATGATGGAGAAATCCCCAGCGGCAACCGCACAGCTGACGATGACGTCACCAGCAGGATACTGGCCGGAAAATCAGTTTTCTAGCGGAGGTTTCCAGGCCGTTACAACAGAACAGCAGATGTACGTGATCTCAGCTCCCGGTACAGTTTACCATACGCCATCACCACCTCCTCATATGATGCGACCGGTCACCGGACAAACCGGTCACGGTTACTACGCAGTGCAGGGGCGTATGGGCTCTGATGTTTACCGGGAGCAGCCGGTTTACAATGCGGTACAACAACAACAACCTCCTCAGCAAACTCTTCCGCAACAGCCGCCAAAAGTTTCGACGCCAGATCATCCTCTAACGTACACGCAGGTGGCTTACGACAGCACGACCGGAAGACATGTATACTACACGGCCGGAGGTGGAGCTGTGGCGCCGCCGCCGCAGTATCAGGGTGTTCCGACTACCGTCAGCAGCGAGATAAGACAACAAGCTGCCCAGCAAGTTGGCGCACCAGTGGGGCAGGATGTTAAATTCGTTCCAAAAGCATCACAAGGAAAGGACTCCACCGACTGA 1416 52.82 MENYSFNYSSYPESGDSSPRSREIDFDNPPPWDEHSNNNNNYKVKFMSSYGGKIQPRPHDNQLSYVGGDTKILAVDRSIKFSSLLARLSSISDSDVTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRGSVKPARMRLFLFPVNSTPGFASSADEVRSDRERFVDALNSGPANPAEATKPSTPINNHDFLFGLEKGSVPPPMPVAEQKLHDTVPEKAAPPTEFATGPGQADRHQIDMQRQLQELQRLQIAEHDQAMYRRSRNDEINQVGGYGAAGDYYMHKMMEKSPAATAQLTMTSPAGYWPENQFSSGGFQAVTTEQQMYVISAPGTVYHTPSPPPHMMRPVTGQTGHGYYAVQGRMGSDVYREQPVYNAVQQQQPPQQTLPQQPPKVSTPDHPLTYTQVAYDSTTGRHVYYTAGGGAVAPPPQYQGVPTTVSSEIRQQAAQQVGAPVGQDVKFVPKASQGKDSTD 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9577075 9580749 - Conep08aG0106600.1 Cone8ag1038 443587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1038 471 MobiDBLite consensus disorder prediction 375 400 - -
Cone8ag1038 471 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 63 146 - -
Cone8ag1038 471 SUPERFAMILY CAD & PB1 domains 59 149 - -
Cone8ag1038 471 Coils Coil 233 253 - -
Cone8ag1038 471 MobiDBLite consensus disorder prediction 1 17 - -
Cone8ag1038 471 MobiDBLite consensus disorder prediction 1 38 - -
Cone8ag1038 471 Pfam PB1 domain 59 145 IPR000270 GO:0005515(InterPro)
Cone8ag1038 471 PANTHER OS05G0427100 PROTEIN-RELATED 8 404 IPR053198 -
Cone8ag1038 471 SMART PB1_new 58 146 IPR000270 GO:0005515(InterPro)
Cone8ag1038 471 CDD PB1_UP2 47 144 - -
Cone8ag1038 471 Gene3D - 64 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0800 Cone-Chr2:34015139 Cone8ag1038 Cone-Chr8:9577075 6.90E-09 dispersed
Cone7ag0873 Cone-Chr7:6739394 Cone8ag1038 Cone-Chr8:9577075 9.85E-78 dispersed
Cone8ag1038 Cone-Chr8:9577075 Cone9ag1040 Cone-Chr9:5586984 1.31E-36 dispersed
Cone10ag1081 Cone-Chr10:7501998 Cone8ag1038 Cone-Chr8:9577075 1.38E-125 wgd
Cone12ag1011 Cone-Chr12:8540219 Cone8ag1038 Cone-Chr8:9577075 9.02E-289 wgd
Cone3ag1068 Cone-Chr3:29353861 Cone8ag1038 Cone-Chr8:9577075 1.22E-126 wgd
Cone4ag1278 Cone-Chr4:10507725 Cone8ag1038 Cone-Chr8:9577075 1.47E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1011 Cone8ag1038 Cone3ag1068 Cone10ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007434 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 0 36