Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1047 ATGATGAAGAAAAGTCTTATGATTTTTCAGGGAATGGAGGATCCCGGCTTCATTAACCCATGGCAAACCGATCAACTTAGCATAAGCCCGCTTTTTGGACAAAGTTTACAGCAGTACCCTTTGTACTCACATGAACTTCAAGGCCTAAACCAGAAAACTACTTCTTTAGATACTTTTCAAATCGACATGCTCACTAGGCCAATGAAACAGTTCAGAAGTAGTGTTAATGGAGGCAACTCATTCGGAATGCCCAATCCGGTTTCTCTTTCGAGCTCTACTGATTATCTGAACCAAATGGGCCCCGTATTGAAGCCGAAGGAGGAGGAAGAGATATTGTGTTCTAGAAGCCTCCATAATTCAGACATATGGACTGCTTCTCAGTTAGAAACCAAGATCAGGTCCAGTAAAGGTGGCAGAATTAACGCTCAAGGGACTCAAGATCACATTCTTGCTGAACGCAGACGACGTGAAAAACTTAGCCAAAAGTTCATAGCTCTATCCGCAATTGTTCCCGGCCTCAAAAAGATGGACAAGGCTTCTGTGCTTGGAGATGCAATAAAGTACTTGAAACAATTGCAAGAGAAGGTGAAGACGTTAGAGGAAGAAACTAGGAAGAAAAATATGGGACCGGTTATTTTCGTGAAGAGATCCCAATTATTGGGAGATCATGGGAGTTCCTCCTTGAATGCGAATTCCTCGAGCGGGCCCTTTAACGATCTGTTGCCGGAAATTGAAGCGAGGTTCTGTGATAAAGATGTGCTCATAAGAATACATTGTGAGAAGAGAAGAGGTGTTGTGGAGAAAACTATGGATGAGATTGAAAAGCTTCATTTGACTATAGTCAATAGTAGTGCTATGAGTTTCGGTAGTTCTACTCTTGACATAACCATTGTGGCTCGGATGAACAATGAATTCTGCTTGACTACGAATGATGTCGTGAAGAAGCTACACTCAGCTTTCACATTGTTGATGTGA 975 42.15 MMKKSLMIFQGMEDPGFINPWQTDQLSISPLFGQSLQQYPLYSHELQGLNQKTTSLDTFQIDMLTRPMKQFRSSVNGGNSFGMPNPVSLSSSTDYLNQMGPVLKPKEEEEILCSRSLHNSDIWTASQLETKIRSSKGGRINAQGTQDHILAERRRREKLSQKFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKTLEEETRKKNMGPVIFVKRSQLLGDHGSSSLNANSSSGPFNDLLPEIEARFCDKDVLIRIHCEKRRGVVEKTMDEIEKLHLTIVNSSAMSFGSSTLDITIVARMNNEFCLTTNDVVKKLHSAFTLLM 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9609525 9610669 + Conep08aG0107500.1 Cone8ag1047 443596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1047 324 Coils Coil 182 209 - -
Cone8ag1047 324 PANTHER BHLH TRANSCRIPTION FACTOR 19 320 IPR052610 -
Cone8ag1047 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983(InterPro)
Cone8ag1047 324 Pfam Plant bHLH transcription factor, ACT-like domain 247 311 IPR054502 -
Cone8ag1047 324 Pfam Helix-loop-helix DNA-binding domain 148 193 IPR011598 GO:0046983(InterPro)
Cone8ag1047 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 211 IPR036638 GO:0046983(InterPro)
Cone8ag1047 324 Gene3D - 142 209 IPR036638 GO:0046983(InterPro)
Cone8ag1047 324 SMART finulus 149 198 IPR011598 GO:0046983(InterPro)
Cone8ag1047 324 CDD bHLH_AtNAI1_like 145 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0471 Cone-Chr8:3119283 Cone8ag1047 Cone-Chr8:9609525 6.86E-15 dispersed
Cone8ag1047 Cone-Chr8:9609525 Cone9ag1420 Cone-Chr9:10535519 8.89E-62 dispersed
Cone8ag1047 Cone-Chr8:9609525 Cone9ag1419 Cone-Chr9:10528658 3.39E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46700 PF00295 Glyco_hydro_28 5.10E-30 CL0268 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1047 - - - 0.0