Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1053 ATGGAGCTCAACAAAATATTCATCCAAGTAACAGCGATATGTTTGGTGTCAATGTTCATCATGGGAGAGGCGCAGAACACCCCGGCTGACTACAAGAGAGCCCACAATGAAGTGAGGGGAGAGGTCGGAGTTGGCCCGGTGCAATGGAACCGGACTGTAGCGGCTTTTGCCCGGAAATATGCACAAGTGAGGGCAAATGATTGCGCGATGGTGCACTCAATGGGGCCCGATTATGCCGAGAACATCGCGGAAGGGGATGAGACCTTGACCGGGTATGCAGCCGTGAAGTATTGGGCCACAGAAAAGCCTGATTATGATTATAACACGAACTCATGCTCAAAGGGTGAAGATGAATGTGGGCATTATGTTCAGATTGTGTGGAGGAAGACGACCGAGATTGGTTGTGCTAGAGTTCGATGCAACAATGGGAGGTATTTTGTTACTTGCAATTATTATCCACCCGGTGGGTACGAAGATGAGAAGCCTTATTGA 492 48.98 MELNKIFIQVTAICLVSMFIMGEAQNTPADYKRAHNEVRGEVGVGPVQWNRTVAAFARKYAQVRANDCAMVHSMGPDYAENIAEGDETLTGYAAVKYWATEKPDYDYNTNSCSKGEDECGHYVQIVWRKTTEIGCARVRCNNGRYFVTCNYYPPGGYEDEKPY 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9634890 9635480 + Conep08aG0108200.1 Cone8ag1053 443602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1053 163 SMART SCP_3 26 159 IPR014044 -
Cone8ag1053 163 Pfam Cysteine-rich secretory protein family 33 151 IPR014044 -
Cone8ag1053 163 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576(InterPro)
Cone8ag1053 163 CDD CAP_PR-1 28 163 - -
Cone8ag1053 163 Gene3D CAP 23 163 IPR035940 -
Cone8ag1053 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 33 158 IPR001283 GO:0005615(PANTHER)
Cone8ag1053 163 FunFam CAP, cysteine-rich secretory protein, antigen 5 25 163 - -
Cone8ag1053 163 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cone8ag1053 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cone8ag1053 163 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Cone8ag1053 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cone8ag1053 163 SUPERFAMILY PR-1-like 29 163 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1053 K13449 - - rcu:8268873 184.496
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1023 Cone-Chr12:8595582 Cone8ag1053 Cone-Chr8:9634890 2.49E-114 dispersed
Cone8ag1053 Cone-Chr8:9634890 Cone8ag1055 Cone-Chr8:9639921 4.75E-90 dispersed
Cone8ag1052 Cone-Chr8:9630259 Cone8ag1053 Cone-Chr8:9634890 1.20E-90 tandem
Cone8ag1053 Cone-Chr8:9634890 Cone8ag1054 Cone-Chr8:9636842 3.35E-90 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 1 0 0 0 0 9