Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1057 ATGATTACCTTCAAGAATACTACCCCATCGCTCATTCACGCTATAGTACTATCCCTAGCCCTAGTACTTCTTCACCCACATCCATCTAATGCTCAAGACTCCCACCAAGACTACCTAGCCCCCCACAATGCGGCTCGAGCTGAAGTCGGTGTGGACCCACTTGTTTGGGACGACCAGGTAGCTGCATACGCACAAAACTACGCCCAACAGCGGATCAATGACTGCCAGCTGGTGCATTCCAATGGGCCCTATGGGGAGAACATCGCGTGGAGCAGCGGAGACATGTCAGGCTCAGATGCTGTGCAGTTGTTTGTGAATGAGAAGGCTCACTATGACCATCAATCTAACTCATGCGTTGGAGGGGAGTGCTTGCACTACACTCAAGTGGTTTGGCGTAATTCAGCTCGGCTCGGGTGCGCTAAGGTGCGGTGCAGTAATGGTGGGACGTTTGTCGGATGCAACTATGATCCTCCGGGGAATTTTAATGGCCAGAGTCCTTATTGA 504 51.79 MITFKNTTPSLIHAIVLSLALVLLHPHPSNAQDSHQDYLAPHNAARAEVGVDPLVWDDQVAAYAQNYAQQRINDCQLVHSNGPYGENIAWSSGDMSGSDAVQLFVNEKAHYDHQSNSCVGGECLHYTQVVWRNSARLGCAKVRCSNGGTFVGCNYDPPGNFNGQSPY 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9646801 9647444 - Conep08aG0108600.1 Cone8ag1057 443606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1057 167 CDD CAP_PR-1 36 167 - -
Cone8ag1057 167 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 36 163 IPR001283 GO:0005615(PANTHER)
Cone8ag1057 167 FunFam Putative pathogenesis-related protein 1 32 167 - -
Cone8ag1057 167 SMART SCP_3 33 163 IPR014044 -
Cone8ag1057 167 Gene3D CAP 28 167 IPR035940 -
Cone8ag1057 167 PRINTS Allergen V5/Tpx-1 family signature 123 139 IPR001283 -
Cone8ag1057 167 PRINTS Allergen V5/Tpx-1 family signature 150 163 IPR001283 -
Cone8ag1057 167 PRINTS Allergen V5/Tpx-1 family signature 100 113 IPR001283 -
Cone8ag1057 167 PRINTS Allergen V5/Tpx-1 family signature 54 72 IPR001283 -
Cone8ag1057 167 SUPERFAMILY PR-1-like 27 167 IPR035940 -
Cone8ag1057 167 ProSitePatterns CRISP family signature 2. 150 161 IPR018244 GO:0005576(InterPro)
Cone8ag1057 167 Pfam Cysteine-rich secretory protein family 40 155 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1057 K13449 - - vvi:100246419 224.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1312 Cone-Chr18:9119042 Cone8ag1057 Cone-Chr8:9646801 1.49E-49 dispersed
Cone3ag0306 Cone-Chr3:1566160 Cone8ag1057 Cone-Chr8:9646801 2.55E-34 dispersed
Cone8ag1057 Cone-Chr8:9646801 Cone8ag1060 Cone-Chr8:9659012 1.86E-41 dispersed
Cone8ag1057 Cone-Chr8:9646801 Cone8ag1058 Cone-Chr8:9652880 2.31E-65 tandem
Cone10ag0400 Cone-Chr10:1903491 Cone8ag1057 Cone-Chr8:9646801 3.12E-81 transposed
Cone12ag1024 Cone-Chr12:8597656 Cone8ag1057 Cone-Chr8:9646801 6.71E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127