Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1066 ATGCAAAATGGGCATATTTGTTTACAGTACTGTTCCTTATTTTCTCAGCTAAACAAGCTCTATGTGGCACCATTGTCACATCTTTTCCCGGCTTCGATGGCGAACTCCCTTTCTACCTCGAGACAGGTGGGAAATTCCGAGATGTTTTATTACTTGATCGAGTCAGAAGGGAATCCTAGAGAAGATCCCCTGATTGTATGGTGGAGTGGAGGCCCTGGTTGCTCTGCTTTCAATGGCCTTATCTATGAAGTTGGTCCATTAGCTTTCAATATCACTCATTATGAAGGTGGGGTGCCAAAAACTTACTATTATCCATATGGTTGGACACAGAGTGCTAGCATATTATTTGTAGATGCACCAGTCGGGACCGGTTTCTCTTACGCTACAGATGCATCTGATTACATCACCTCAGACTTGAAATCAGCATGGCAAATTGCTGGATTTATTAGACTGTGGCTGGAGGAGAACCCGAGATTTCTTCTGAATCAGTTATTCATCGGAGCTGATTCGTATGCCGGTGTTTCTGCATCAATTGTTGTCGATCTTCTAATAGATGATAATGAATCGGGGCGAATTCCGCGATTGAATCTCAAGGGATATATGCTGGGGTGTCCAAAAATAGATTCAGTTATCACTGAAAATGCAAAGATCTACTATTCTAATCAATTAGGGCTTATTTCGGATGAGCTGTTCAAGGCAGCTTATACTAGTTGTAATGGAAGCTTCTATGAAGTTGATATCGGTCAAGCCGAATGCTATGAAGATCTTCAATTGATCAAGAGGAATATTAAAGACATAAACCGGTTAAACATTCTCGAACCAAAGTGCACCTGGGCAGGTCCGGAGCTCGACCTAAATGGGGTATCGGAAAGAAGATCCTTAGAAGAAGAACTAGAAGAAGAAAACCCTAAAAAATTCATCTTATCACCTCCCAGAATTCCCGAGTTTTATTGCCATAATTTCAATTATGCGCTTTCTTACGTATGGGCGAACGATAAAGGTGTACGATCGTCTCTTAACATCCGTCCGGATACGGTGTATGATTGGAAGAGATGCAACAAAAGTTTAGCGTACACATATGATGTCACGAGTGTGCTTGATTATCATAGAAATCTAAGCACAAAGGGGTTGCAAGTTCTTGTATACAATGGTGATCATGATCTTGTAATCCCGAATATTGCAACTGAGAGATGGATTAAGGCACTGAATCTGACCATTGTGAACGATTGGAGACCATGGGTGGTAGACGGTCAAATTGCCGGATATACAATCAAGTATTCAGATAATGGGTACCGCTTAACTTATGCAACGGTTAAGGGGGCAGGTCACTCACCTCAAGAATATAAGAGGAGAGAATGCTTTGAGTTGTATAATAGGTTTATCCATTACTATGAGGTTTGA 1401 41.33 MQNGHICLQYCSLFSQLNKLYVAPLSHLFPASMANSLSTSRQVGNSEMFYYLIESEGNPREDPLIVWWSGGPGCSAFNGLIYEVGPLAFNITHYEGGVPKTYYYPYGWTQSASILFVDAPVGTGFSYATDASDYITSDLKSAWQIAGFIRLWLEENPRFLLNQLFIGADSYAGVSASIVVDLLIDDNESGRIPRLNLKGYMLGCPKIDSVITENAKIYYSNQLGLISDELFKAAYTSCNGSFYEVDIGQAECYEDLQLIKRNIKDINRLNILEPKCTWAGPELDLNGVSERRSLEEELEEENPKKFILSPPRIPEFYCHNFNYALSYVWANDKGVRSSLNIRPDTVYDWKRCNKSLAYTYDVTSVLDYHRNLSTKGLQVLVYNGDHDLVIPNIATERWIKALNLTIVNDWRPWVVDGQIAGYTIKYSDNGYRLTYATVKGAGHSPQEYKRRECFELYNRFIHYYEV 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9685925 9689350 + Conep08aG0109500.1 Cone8ag1066 443615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1066 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 459 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cone8ag1066 466 SUPERFAMILY alpha/beta-Hydrolases 42 462 IPR029058 -
Cone8ag1066 466 Gene3D alpha/beta hydrolase 28 465 IPR029058 -
Cone8ag1066 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 177 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1066 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1066 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1066 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1066 466 FunFam Carboxypeptidase 315 465 - -
Cone8ag1066 466 Pfam Serine carboxypeptidase 43 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1066 K16296 - - rcu:8273844 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1066 Cone-Chr8:9685925 Cone8ag1068 Cone-Chr8:9696866 3.69E-128 dispersed
Cone8ag1066 Cone-Chr8:9685925 Cone8ag1067 Cone-Chr8:9691283 7.90E-237 tandem
Cone10ag1056 Cone-Chr10:7350554 Cone8ag1066 Cone-Chr8:9685925 6.76E-150 wgd
Cone12ag1035 Cone-Chr12:8656140 Cone8ag1066 Cone-Chr8:9685925 4.11E-234 wgd
Cone4ag1623 Cone-Chr4:12314381 Cone8ag1066 Cone-Chr8:9685925 5.99E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1035 Cone8ag1066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023714 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 3