Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1069 ATGGCTATCATTATGTTCTTCCTTTTTCATGCACTGCTTCTTTTTTTGCTTACATCCGACATAAACCTTATTGCATCACAATCCATCATCAAGACCCTCCCTGGCTTCTCCGGCGACCTTCCTTTCAAACTCGAAACCGGATATATTGGAGTGGGAGACTTGGAAGAGGTTCAGCTGTTCTACTACTTCGTCGAGTCGGAGCGTAGTCCGAAGGATGATCCTCTTCTACTTTGGCTCACCGGCGGTCCTGGCTGCTCTGGATTATCTGCTATCTTTTACGAAAATGGTCCCCTGAAATTCGACTATGCTAACTCCAGTATCGATACGCCATCGTTTCTGTTAAACCGCTATTCATGGACAAAGGTCGCAAACGTAATATTTGTTGATGCACCTGTCGGAACCGGATTCTCGTACGCACAAGAGGCGGAAGGATACAACAACAACGACACATCGCAGGTTACACGTAATTATGAATTTCTAAGGAAGTGGCTTGTGGATCACCCAAGATTTCTGGAAAACCCTCTCTATATCACCGGCGATTCTTATTCAGGCATGATCACTCCTATGCTCGTGGATAAAATCATAGACGCTAATGATGCTGGAGTTCAACCACTAATGAATCTCAAAGGATATGTGCTCGGCAATCCAGTTACAGATAATTTCTGGGATCAGAATTCAAGAATCGATTTCGCTCATGGGATGGGACTTATTTCTAATAAGCTCTATGAGAGTACAAAGAGAAATTGCGATGGCGTTTATGTCGTTTCCAACTTAAGCAATCCACTTTGTCTACCTGATCTTCAAATTGTCAACGAGTGTTTGACAAGATTAGAAATGGCACAAATATTGGAACCTTCCTGTTGCTACATGTCGCCTACACCAAGATTGCTTTGCTCAGATGATCACTTGAACTTTTTTCTTCAAGAGAACAGCATGGATCTCATTTTAACACCTAAACCTCATCATCATACTCATGATCGTCACGGACCATGGTGTCGGGTGTATAACTATGTTTTCTCCTACGCATGGGCAAATGATGCAGCTGTTCAACGTGCTCTTCACGTGCGACAGGGGACGATAAAAGAATGGGATAGATGCAACTTGACTGTGACTAATTCTTACACACATAATATCAAGAGTGTTGTCGGATATCACCTGAATATCACCGAGAAAGGGTTTTACCGTGCTCTGATTTACAGTGTAATAAGCATTTACAGTGGTGACCATGACATGGCTGTGCCATATTTGGGCACAATGACTTGGATTGAGAGCCTTAACCTAACCGTTGGTGATGCTTGGAGGCCCTGGTTCACTAACGGTCAAGTTTCAGGATACACGGAGCTATATACAGTAAACAAATACAGCTTGACTTACGCAACTGTGAAGGGAGGAGGTCACACAGCTCCAGAATACAAACCTGAAGAAGTCTTTGCAATGATTGAGAGGTGGTTTGCTTATATGCCTCTTTAG 1470 43.27 MAIIMFFLFHALLLFLLTSDINLIASQSIIKTLPGFSGDLPFKLETGYIGVGDLEEVQLFYYFVESERSPKDDPLLLWLTGGPGCSGLSAIFYENGPLKFDYANSSIDTPSFLLNRYSWTKVANVIFVDAPVGTGFSYAQEAEGYNNNDTSQVTRNYEFLRKWLVDHPRFLENPLYITGDSYSGMITPMLVDKIIDANDAGVQPLMNLKGYVLGNPVTDNFWDQNSRIDFAHGMGLISNKLYESTKRNCDGVYVVSNLSNPLCLPDLQIVNECLTRLEMAQILEPSCCYMSPTPRLLCSDDHLNFFLQENSMDLILTPKPHHHTHDRHGPWCRVYNYVFSYAWANDAAVQRALHVRQGTIKEWDRCNLTVTNSYTHNIKSVVGYHLNITEKGFYRALIYSVISIYSGDHDMAVPYLGTMTWIESLNLTVGDAWRPWFTNGQVSGYTELYTVNKYSLTYATVKGGGHTAPEYKPEEVFAMIERWFAYMPL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9700799 9704419 + Conep08aG0109800.1 Cone8ag1069 443618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1069 489 Pfam Serine carboxypeptidase 34 484 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1069 489 SUPERFAMILY alpha/beta-Hydrolases 30 485 IPR029058 -
Cone8ag1069 489 Gene3D - 332 488 - -
Cone8ag1069 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 483 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cone8ag1069 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1069 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1069 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1069 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone8ag1069 489 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185(InterPro)
Cone8ag1069 489 Gene3D alpha/beta hydrolase 24 294 IPR029058 -
Cone8ag1069 489 FunFam Carboxypeptidase 331 489 - -
Cone8ag1069 489 FunFam Serine carboxypeptidase-like 19 24 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1069 K16296 - - vvi:100258422 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1038 Cone-Chr12:8672114 Cone8ag1069 Cone-Chr8:9700799 4.09E-144 dispersed
Cone2ag0720 Cone-Chr2:32826698 Cone8ag1069 Cone-Chr8:9700799 1.59E-154 dispersed
Cone2ag0721 Cone-Chr2:32850756 Cone8ag1069 Cone-Chr8:9700799 2.17E-169 dispersed
Cone4ag1623 Cone-Chr4:12314381 Cone8ag1069 Cone-Chr8:9700799 7.59E-165 dispersed
Cone5ag0944 Cone-Chr5:4041034 Cone8ag1069 Cone-Chr8:9700799 1.54E-109 dispersed
Cone5ag1255 Cone-Chr5:5951147 Cone8ag1069 Cone-Chr8:9700799 1.10E-15 dispersed
Cone8ag1069 Cone-Chr8:9700799 Cone9ag0436 Cone-Chr9:2016707 4.42E-08 dispersed
Cone8ag1068 Cone-Chr8:9696866 Cone8ag1069 Cone-Chr8:9700799 3.43E-150 tandem
Cone8ag1069 Cone-Chr8:9700799 Cone8ag1070 Cone-Chr8:9706691 3.10E-179 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g739 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000253 3 8 1 3 3 5 0 5 5 2 3 6 2 7 6 4 6 13 2 6 4 6 3 7 8 9 2 5 4 14 152