Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1076 ATGGAACTGCTCTTCTTTGCTAAACAGAATGAAAAGTTAGGGCTTGTTCCGTGTCATTTCGCAGCGTTTCGTTTGTCTGCTGCAAGCGAGCAAGTCTTTCTGATTAGAGTTCAGAGCACAGGGACGGAGATGGGGGCGAAGGAAACTGCCGGCGATACTACTCGGCCATGGCAATCCTATAACACCGTTTTTACAAATGCCAAAGCTGGCATGGAAGGAGTTGACAAGGAGAAAGTTCAGAAAATCGTATATGAAATGAGTAAAGGGTCGAAATATTTTCAGAACGAGGAACGCAAGGAGGCTTTTATTAGGCAGAAGATTGACAGCATGCAGGCTCGATGCGCAAAGCTAACAGCAGCGGATCTATCTCATCATCGGAAGGTTGCTGATAAAAGAATTTCAGAGCTAGAAGCTACACGTGACCTGTCAAGAAGTTGGTTGCACGTAGATATGGATGCTTTCTATGCAGCCGTTGAAACATTAAGCAACCCTTTGTTAAAAGGAAAGCCAATGGCAGTTGGCGGCATGTCCATGATTTCCACTGCTAATTATGAGGCTCGCAAATTTGGGGTTCGTGCTGCTATGCCTGGCTTCATTGCACGGAAACTCTGTCCAGAGTTAATTTTTGTTCCTGTAGATTTCAAGAAGTATACTTATTATAGTGGTTTAACTAGAAAAGTTTTTCAGAGATATGATCCCAACTTCATTGCTGGTAGTTTGGATGAAGCATACCTTAACATTACTGATGCCTGTAAAGAAAGGGGAGTCCCTAGTGAAGAAATTGCCAAAGAACTCAGATCTAGTGTTTATGAAGAGACTGGTCTTACATGTAGTGCTGGAGTGGCGCCAAACCACCTGCTTGCGAAGGTTTGCTCTGATATTAACAAGCCAAATGGACAGTTCATTTTACCAAACGACCGGACAGCTGTCATCACATTTATATCCTCACTTCCCATAAGAAAGATTGGGGGCATCGGTAAAGTCACGGAACATATATTAAAAGATGCTTTTGAAGTAAATACATGTGAGGAGATCCTTCAAAAGGGCGATTACCTCTGTGCACTATTCTCTCATAGTTCAGCAGATTTTTTTCTTTCCGTGGGACTTGGGCTTGGGAGGACTGACACCCCAGAAATCAAGCTGCGAAAAAGCATTAGTAATGAGAGAACATTTGCAGCCACAGATGATGAGGATCTGTTTAACCAGAAATTGGCTGATCTTGCAGAGATGCTGTCTACTGATATGCAGAAAGAGGGTCTTTGTGGGCGCACATTGACTCTAAAACTAAAAACCGCATCTTTTGAGACTCGTACAAGAGCTGTGACTTTGCACAAATATATTTGCTCGAGTGAGGATATCTTGCGAAATGCTTCAAAGTTGCTAAAGGCTGAGCTACCTCTTTCTTTAAGACTCATTGGCCTACGAATATCTCAGTTCCGTGAAGATAAAGTTGGTGTTCCATCTGATCCGTCACAAAGACTTCTAACCAGATTCATCATATCAGGGGATGCTTCTAAAAGAATCACAGGCGATCAATCTTATTTAGACTTGGATAGCCACTTCATGAACGATAAAGAAACTAGTTTATCAATCAGTAGTGTGGGGACTTGTCATCAGGGTTATGAAGATTCTGAAACTGGAAATCATTTTCAAGATACAGGTTTTAATAACTGTACCATCAACAACAATATCTGTGAGTTGGACAAACTTGAAACATGTTTAGATCCCACATTCCCGGGAAAATATGAAAGAAATTGTGAAGACAGAGTGAGTCTCGACAGTCAAATTAAGGACAAGCAATCATCAGATCAGAAAGGACAGATCCTGTGGGAGAATGACTACAAGTGTTCTTTATGTGGGATTGAACTGCCGCCAAATTTTGTTCAGGAGAGGCAAGAGCACTCTGATTTTCACATGGCTCAGAATCTTCAGGAGGAGGACTCTAGCATTCAATCCAGATCTTTCGTTTCAAGGCCAAGGACTGTTAACAAGGATCAAGTTTCGAGCCAAAGGAAGCACAAAAGGCAGAAACCAAATCCAAAAGAAGGCGGTGGTCATATTCCCATCGATCTGTTCTTCGTCAAGAGTAATCAGAACTTCTAA 2103 42.08 MELLFFAKQNEKLGLVPCHFAAFRLSAASEQVFLIRVQSTGTEMGAKETAGDTTRPWQSYNTVFTNAKAGMEGVDKEKVQKIVYEMSKGSKYFQNEERKEAFIRQKIDSMQARCAKLTAADLSHHRKVADKRISELEATRDLSRSWLHVDMDAFYAAVETLSNPLLKGKPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPVDFKKYTYYSGLTRKVFQRYDPNFIAGSLDEAYLNITDACKERGVPSEEIAKELRSSVYEETGLTCSAGVAPNHLLAKVCSDINKPNGQFILPNDRTAVITFISSLPIRKIGGIGKVTEHILKDAFEVNTCEEILQKGDYLCALFSHSSADFFLSVGLGLGRTDTPEIKLRKSISNERTFAATDDEDLFNQKLADLAEMLSTDMQKEGLCGRTLTLKLKTASFETRTRAVTLHKYICSSEDILRNASKLLKAELPLSLRLIGLRISQFREDKVGVPSDPSQRLLTRFIISGDASKRITGDQSYLDLDSHFMNDKETSLSISSVGTCHQGYEDSETGNHFQDTGFNNCTINNNICELDKLETCLDPTFPGKYERNCEDRVSLDSQIKDKQSSDQKGQILWENDYKCSLCGIELPPNFVQERQEHSDFHMAQNLQEEDSSIQSRSFVSRPRTVNKDQVSSQRKHKRQKPNPKEGGGHIPIDLFFVKSNQNF 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9737812 9742158 - Conep08aG0110700.1 Cone8ag1076 443625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1076 700 Gene3D - 380 484 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cone8ag1076 700 MobiDBLite consensus disorder prediction 643 664 - -
Cone8ag1076 700 Pfam impB/mucB/samB family 149 293 IPR001126 GO:0006281(InterPro)
Cone8ag1076 700 Hamap DNA polymerase IV [dinB]. 143 496 IPR022880 GO:0003887(InterPro)
Cone8ag1076 700 ProSiteProfiles UmuC domain profile. 146 326 IPR001126 GO:0006281(InterPro)
Cone8ag1076 700 SUPERFAMILY DNA/RNA polymerases 121 374 IPR043502 -
Cone8ag1076 700 MobiDBLite consensus disorder prediction 643 688 - -
Cone8ag1076 700 FunFam DNA polymerase kappa 272 375 - -
Cone8ag1076 700 FunFam DNA polymerase IV 380 485 - -
Cone8ag1076 700 Pfam Ubiquitin-Binding Zinc Finger 613 646 IPR041298 -
Cone8ag1076 700 CDD PolY_Pol_IV_kappa 147 479 IPR022880 GO:0003887(InterPro)
Cone8ag1076 700 Gene3D - 151 302 IPR043128 -
Cone8ag1076 700 FunFam Polymerase (DNA directed) kappa 156 208 - -
Cone8ag1076 700 Gene3D - 64 150 - -
Cone8ag1076 700 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 382 477 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cone8ag1076 700 Gene3D - 163 211 - -
Cone8ag1076 700 Gene3D - 303 375 - -
Cone8ag1076 700 FunFam DNA polymerase kappa subunit 207 301 - -
Cone8ag1076 700 Pfam impB/mucB/samB family C-terminal domain 382 483 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cone8ag1076 700 ProSiteProfiles Zinc finger UBZ3-type profile. 609 646 IPR041298 -
Cone8ag1076 700 FunFam DNA polymerase kappa subunit 63 153 - -
Cone8ag1076 700 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 55 680 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1076 K03511 - - cit:102631401 876.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1100 Cone-Chr8:9834072 Cone8ag1076 Cone-Chr8:9737812 9.95E-35 transposed
Cone12ag1043 Cone-Chr12:8711651 Cone8ag1076 Cone-Chr8:9737812 6.01E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30