Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1100 ATGAGTTTCAATTCTCCTCGTTCTGCGAAATCCTCCGGTCAAAGGTCTAAGCGGAGCCTGAGCAATTCAGTATCTTCGAATCCTTCCGGAAGCAGCAACGGTAAGAGGAAGAAGAGCAACCAGAAAACCCTAGGCGTCGCATGGGGATCCAATTCTCTTTCGTCATCTCGCTCCTCGTTTCGAAATTCCCCCTTCTCTGATTTCGGCAGTTATATGGAAGTGAAGAACAGGAAACTGCAGGACCAATTTGATGCTGAAGCGTCGAGTTCTTCACTAAATGCTTCTAGTTCTGGAATACATATATTTCACGGTGTTTCTATCTTTGTTGATGGCTTCACCATTCCTTCCAGTCAGGAATTGCGGGGTTACATGTTAAAGTATGGTGGAAGATTTGAAAATTATTTTTCAAGACGGCGTGTCACCCACATTATCTGCAGTAATCTTGCAGACGGTAAAATGAAAAACATGAGGTCCTTCAGCAGTGGGCTTCCAGTGGTAAAACCCACCTGGATTTCAGATTCAGCTGCTGCTAACAAACTTTTGAGTTGGACACCTTATCAAATAAATCCCCTCTCAGATAGCCAACCTAGATTGTCTGCCTTCTTTGCTCCAAAAAACAGACAAGCTTTGAAGGATACTACGACACATATAACTTGTGAAGAAATACAAGAAAGAGAGGATTCAACTTTGAAGGCTGAGACATCAAAGGATGTAAATTCTAGCATGGGTGAATTCATAAAATGCAGTGCGAAAGTCTATGAAAAATCTGATATATTTCTACATGATAACAGTAATTCAACAGTGAATGAGGAGATAAGTGGTGGTAACATAAAATGTGAAAAAATGGAAGCACCCAATACTGCAGATGCTGAAGATAAAAGCTGTGCTCATGAATCTAGTTATTGTGGGCCCTCTGCATCAGTTAGTAGCCACTGCTTAAATGATACCCTTATAAAAGGATCTCCAAGCGCTAATGTAGTTAGGCCTTATGAGCAGAGCCACTCAACTCTTGGGGATCCTAATTTTGTGGAAAATTATTTCAAGAACTCGAGGTTGCATTTCATAGGAACCTGGAGAAATCGGTATCAGAAATGTTTTCCCAACTCACATAATGAATTCAAGTTCACATCAAGTCTCTCTAATTCTGGGAAAACTTTTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTAGTTATTAGGAACAATCCTGAACTAAAGGATAAGCCTGTTGCTGTATGCCATTCAGATAATCCAAAAGGAACTGCTGAAATTTCATCGGCAAACTACCCTGCTCGCGATTATGGAGTTAAGGCAGGGATATTTGTTAGAGATGCCAAGGCTCTTTGCCCCCACCTTGTTATTGTTCCATACAGCTTTGAAGCTTATGAGGAGGTAGCTCATAAGTTCTACGAAACATTGCATAAGCACTCCAACATAGTGCAGGCTGTTAGCTGTGATGAAGCATTTTTAGCCATCACAGATTCAGAGGGGAAGGATCCAGATCTTTTAGCCTCAACTCTTAGAAAAGAGATTTTTGAGACTACAGGATGCAGTGCTAGTGCCGGTATAGCTGGGAATATGCTAATGGCCCGCCTTGCTACCAAAACTGCTAAACCAGATGGTCAATTTTACATTCCTCCTGATATGGTTGACGATTATTTATGTCAACTTCCCATTAAGGCTCTTCCAGGAATAGGGCGTGTTTTAGAGGATAAGTTGAAGGAGAGAAATGTTTGGACTTGTGGACAATTGCGTATAATTCCCAAGGACACTCTTCAAAAAGACTTCGGAATGAAGACTGGAGAGATGCTGTGGAATTACAGTAGAGGAGTGGACAACCGGTTAGTTGGAATGATTAAGGAGAGCAAATCTATAGGTGCTGAAGTGAATTGGGGTGTGAGGTTCAAGGATTTGAAAGATAGTCAACACTTCCTCTTGAACCTTTGCAAGGAGGTTTCTCTGCGGCTGCAAGGTTGTGGAGTCCAAGGGCGCACTTTTACCCTTAAGATGAAAAAGAGGAGAAAACATGCTGAGGAGCCTGCAAAGTACATGGGATGTGGAGACTGTGAAAACCTGAGCCACTCAGTCACGGTTCCAGTTGCTACTGATGATGTTGAAGTGCTTCAAAGGATTACAAATCAGTTATTTGGGTTTTTCCATGTAGATGTGAAGGACATTCGAGGAATTGGCTTGCAAGTTTCGAAGCTTGAAAGTGAAGATGCCTCTAAGCAAGGGGTGGAAAGAAACACGTTGAAATCATGGCTTGCTTCTTCCTCAACAACCAAAGAAGAACAATCTAATATTAATTATATAGCAAAGGAGAGGGCGGATATAGATAGTGAAGGACAGAGAACCCATGAAACTGAAGGTCAGATGTGTGCTGTTGATTCAGTAGGTCTTCCGGTGCAAACAAATAATAACTCCTCCATTAGTGGAGCTATTCGAAATCAAGTTTCAGATCCACCACCTTTGTCGGATCTTGATAGAGGAGTTATAGAGAGTCTACCTCCAGAGCTCTTTTCAGAATTGAATGAAATCTACAATGGAAAGTTAGCTGATCTTGTAGCCAAAAGTAAAGGAAAAGAGCCAATAAATGAACACACTGGACTTTTGTTATCCGATGAGGTTCCAGAAAACAACATACCTGCAGAAAATAAGTATCACATGGCTGTAGAAGCAGAGGCAGTACCTATTTGTGGGGCAGGATCCTGCAATCTGGTCCATCCCTCAGAGACTGAAAAAGCTGATTTATTACCTTCATCATTAAGTCAAGTAGATATCTCAGTATTGCAGGAGTTGCCTGAAGCCCTGAGGACTGACATACTCGATCAGCTTCCTGCACACAGGCAAAAGGAGTTCTCTTCAGCAGTGGTATCTCTGTCAGAGAACAATTCTTGGTCAGGGAACCCTCCTCTATGGGTTGATAAGTTTAAAGTCAGCAGTTGCTTGATATTGAAAGTTTTAGCAGAGATGTATTGTAATTCAGGGTTACGTGGAAATCTATCTCTAGTTCTGCAACAGGTTTATTCTGATTTCCGGGATCCCTTGGAAGCAGACTCTGATAGCCAGGATATTGCTATCAGTGGTTTATGTGAGATTCTGAAGCAGTATATTAAACTGAAGATTGAGTTAGATCTTGAGGAGATTTATATTTGTTTTCGTCTTCTTAAAAGGTTGGCGATGAAGTCAAAACTTTTTCTTGAAGTGTACAACATTGTTGGTCCTTACCTTCAGGCATCTGCTGGTGAAATCTATGGTGGAAACTTGTATATTTAA 3282 41.32 MSFNSPRSAKSSGQRSKRSLSNSVSSNPSGSSNGKRKKSNQKTLGVAWGSNSLSSSRSSFRNSPFSDFGSYMEVKNRKLQDQFDAEASSSSLNASSSGIHIFHGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRRVTHIICSNLADGKMKNMRSFSSGLPVVKPTWISDSAAANKLLSWTPYQINPLSDSQPRLSAFFAPKNRQALKDTTTHITCEEIQEREDSTLKAETSKDVNSSMGEFIKCSAKVYEKSDIFLHDNSNSTVNEEISGGNIKCEKMEAPNTADAEDKSCAHESSYCGPSASVSSHCLNDTLIKGSPSANVVRPYEQSHSTLGDPNFVENYFKNSRLHFIGTWRNRYQKCFPNSHNEFKFTSSLSNSGKTFIIHVDMDCFFVSVVIRNNPELKDKPVAVCHSDNPKGTAEISSANYPARDYGVKAGIFVRDAKALCPHLVIVPYSFEAYEEVAHKFYETLHKHSNIVQAVSCDEAFLAITDSEGKDPDLLASTLRKEIFETTGCSASAGIAGNMLMARLATKTAKPDGQFYIPPDMVDDYLCQLPIKALPGIGRVLEDKLKERNVWTCGQLRIIPKDTLQKDFGMKTGEMLWNYSRGVDNRLVGMIKESKSIGAEVNWGVRFKDLKDSQHFLLNLCKEVSLRLQGCGVQGRTFTLKMKKRRKHAEEPAKYMGCGDCENLSHSVTVPVATDDVEVLQRITNQLFGFFHVDVKDIRGIGLQVSKLESEDASKQGVERNTLKSWLASSSTTKEEQSNINYIAKERADIDSEGQRTHETEGQMCAVDSVGLPVQTNNNSSISGAIRNQVSDPPPLSDLDRGVIESLPPELFSELNEIYNGKLADLVAKSKGKEPINEHTGLLLSDEVPENNIPAENKYHMAVEAEAVPICGAGSCNLVHPSETEKADLLPSSLSQVDISVLQELPEALRTDILDQLPAHRQKEFSSAVVSLSENNSWSGNPPLWVDKFKVSSCLILKVLAEMYCNSGLRGNLSLVLQQVYSDFRDPLEADSDSQDIAISGLCEILKQYIKLKIELDLEEIYICFRLLKRLAMKSKLFLEVYNIVGPYLQASAGEIYGGNLYI 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9834072 9841621 - Conep08aG0113100.1 Cone8ag1100 443649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1100 1093 PIRSF REV1 955 1084 IPR012112 GO:0003684(InterPro)|GO:0006281(InterPro)|GO:0016779(InterPro)|GO:0042276(InterPro)
Cone8ag1100 1093 PIRSF REV1 15 967 IPR012112 GO:0003684(InterPro)|GO:0006281(InterPro)|GO:0016779(InterPro)|GO:0042276(InterPro)
Cone8ag1100 1093 Pfam impB/mucB/samB family 390 537 IPR001126 GO:0006281(InterPro)
Cone8ag1100 1093 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 623 736 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cone8ag1100 1093 Gene3D BRCT domain 92 189 IPR036420 -
Cone8ag1100 1093 Pfam BRCA1 C Terminus (BRCT) domain 101 174 IPR001357 -
Cone8ag1100 1093 Gene3D - 387 548 IPR043128 -
Cone8ag1100 1093 CDD PolY_Rev1 342 738 - -
Cone8ag1100 1093 Gene3D - 340 376 - -
Cone8ag1100 1093 SUPERFAMILY DNA/RNA polymerases 374 618 IPR043502 -
Cone8ag1100 1093 Gene3D - 559 613 - -
Cone8ag1100 1093 FunFam DNA repair protein REV1 94 189 - -
Cone8ag1100 1093 Gene3D - 404 458 - -
Cone8ag1100 1093 Pfam DNA polymerase-iota, thumb domain 562 614 IPR053848 GO:0003887(InterPro)
Cone8ag1100 1093 CDD BRCT_Rev1 101 188 - -
Cone8ag1100 1093 FunFam DNA repair protein REV1 404 458 - -
Cone8ag1100 1093 PANTHER DNA REPAIR PROTEIN REV1 7 1091 - GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0017125(PANTHER)|GO:0042276(PANTHER)|GO:0070987(PANTHER)
Cone8ag1100 1093 SUPERFAMILY BRCT domain 59 188 IPR036420 -
Cone8ag1100 1093 ProSiteProfiles UmuC domain profile. 387 568 IPR001126 GO:0006281(InterPro)
Cone8ag1100 1093 FunFam DNA repair protein REV1 624 745 - -
Cone8ag1100 1093 SMART BRCT_7 99 178 IPR001357 -
Cone8ag1100 1093 MobiDBLite consensus disorder prediction 1 62 - -
Cone8ag1100 1093 Pfam impB/mucB/samB family C-terminal domain 624 744 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cone8ag1100 1093 ProSiteProfiles BRCT domain profile. 97 188 IPR001357 -
Cone8ag1100 1093 Gene3D - 623 746 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1100 K03515 - - vvi:100247553 1291.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1399 Cone-Chr5:8665740 Cone8ag1100 Cone-Chr8:9834072 2.30E-27 dispersed
Cone8ag1100 Cone-Chr8:9834072 Cone8ag1076 Cone-Chr8:9737812 9.95E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32