Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1108 ATGACTTTCTTCCGGTTCAGATTTGTTATTCTCTTTGCCTTTCTCCTTCTTCGTCGCTCTTTAGCTCTCACCCCAGATGGGATTCTCTTGCTTTCTTTCAAGTACTCCATTCTGAGCGACCCACTCTCTGTTTTAGAGAGCTGGAATTATGGCGACGTAACTCCGTGTTCATGGACTGGCGTCACTTGCTCCGCCGTGTACGACGACGGCGATGGCTCCACAGTGGCGACGTTAAGAGTCACAAGCTTAGCTCTACCTAAATGTCAGCTTCTAGGCCCCATCACAATGGAGATTGGCATGATCGAACACCTTCGAAATCTTGAACTCTCCAACAACTTCATCAACGGCAGCTTGCCTGAGTCGATTTTCAACGCGTCGGAGCTTCAGGTTCTTTCTCTTTCCAGCAACGCAATCTCTGGCGAGTTACCGGAGTCGATCTCCGGCCTAAAAAGCATTCAACTTCTCAACCTTTCCGATAATGCGTTAGGCGGAAAGGTGCCGGAAAATCTCACCACTCTTCAGAATCTAACAGTTGTTTCTCTGAGAAGTAATTACTTCTCTGGAACAATTCCAAAAGGTTTCGATTCCGTTCAAGTGTTAGATCTTTCTTCTAACTTGATCAACAGCACTCTGCCTCTCAATTTTGGCGGAGGTAATTTGCGTTACTTAAACCTCTCTTACAACAAGATTTCCGGCTCTATACCTCCCGATTTCGCGAAGAAAATCCCGATCAATACAACCCTTGACCTTTCTTTCAATAATCTGAGTGGAGCAATTCCAGAGTCGTTACCTTTACTCCATCAAAAAGCAGAGCTTTTTGCAGGAAATGATAATCTTTGTGGAAAACCATTGAAAAATCTATGTTCTGTTCCTTCTACTCTTTCTTCTAGTCCTTTAAATATCTCCTCTGCTTCTTCTTCTTCTTCTCCAGCAATCGCTGCCATTCCAAGAACAATAAGCTCAAACCCAGACAAATCAAACTCAACACAATCACCAAACAGGGTACAAAACACTCAATCACAAGGCAGAATAAAACCGAGTAAAATCGCTGCTATTATTATGGGAGACTTAGCCGGAATGGTACTCCTAGCCATGGCAATTCTCTACATCTACCAGTTCAGGAAAAGAAAAAATCAAAACCCGAGTAAAAACCCAGAAGTGGAAGTGAATTCATCAAAGCAATTAACTACATCATGGTCTGATTGCTTCTCGATCAACTTAGGCGAAGAGAAATCAGAGTCAATAAGTTCAGAAAAGGAGCTAGAGCTTCACGAAGATGCGAAAACAGAGAGGGGTGAAAACCGAGGAGTTTTTGTGACAGTGGATGGAGAGACAGAACTTGAGTTAGAGACGTTGCTTAAAGCTTCAGCTTACATTCTGGGAAATAGCGTTGGAAGCATAGTTTATAAAGCTGTGATTGAAGATGGGACTGCTTTTGCAGTGAGGAGGATTGGAGAGAGTGGAATTGAAAGCGTTCGAGAGTTTGAGAAGCAAGTTAGGGTTATTGCCAAGATCAGACATCCGAATCTGGTTAAAGTTCGTGGGTTTTATTGGGGTGATGATGAGAAGCTCGTGGTTTATGAGTATGTCTCTAATGGCTGCCTTGCCACTACCAATTACAGAAGATCAGACAAGTTTCCTGGAAGTAGTACTCATCTACCTCTTGAAGCTCGGTTCAAGATAGCAAGAGGGATAGCACATGGGATTGCATACATCCACGACAAGAAGCACGTGCATGGCAACGTTAAACCTAACAACATTCTCCTAAACTCTGACATGGAGCCATTGATTAGTGATTTTGGGCTTGAACGCCTAGTTTTTGGTTCCTCCAGGTTTAATCTTGGAAACCAAAGACCATCAACTCCTGGTCGTGAAGGTGGCGGCAGCCCCGCCGGAGCCGGCAGATTTTCATCGGCTTATCAGGCGCCTGAATCGTTGAACAACCTTAAACCGAATCCTAAGTGGGATGTGTATTCATTTGGGATGATATTGCTTGAGCTTCTGACCGCAAGGGTATTGTCGGTGAGTGAGTTGGGACAATGGAGCGGTTGGAATGGTAGTGGGATGGGGAATGAGGAGAGGAACAGAGTTGTGATGATGGCTGACGTGGCGATTAGGGGTGACATGGAGGGCAGAGAGGATGCCATGGTGGCCTGTTTTAAGGTTGGGTTTGGTTGTGTTTCGTTTAATCCACAAAAGAGACCGAATATGAAGGAAGTCGTCCAAGTCATGGACAAAATCTCCCTCGCATCATGA 2256 44.64 MTFFRFRFVILFAFLLLRRSLALTPDGILLLSFKYSILSDPLSVLESWNYGDVTPCSWTGVTCSAVYDDGDGSTVATLRVTSLALPKCQLLGPITMEIGMIEHLRNLELSNNFINGSLPESIFNASELQVLSLSSNAISGELPESISGLKSIQLLNLSDNALGGKVPENLTTLQNLTVVSLRSNYFSGTIPKGFDSVQVLDLSSNLINSTLPLNFGGGNLRYLNLSYNKISGSIPPDFAKKIPINTTLDLSFNNLSGAIPESLPLLHQKAELFAGNDNLCGKPLKNLCSVPSTLSSSPLNISSASSSSSPAIAAIPRTISSNPDKSNSTQSPNRVQNTQSQGRIKPSKIAAIIMGDLAGMVLLAMAILYIYQFRKRKNQNPSKNPEVEVNSSKQLTTSWSDCFSINLGEEKSESISSEKELELHEDAKTERGENRGVFVTVDGETELELETLLKASAYILGNSVGSIVYKAVIEDGTAFAVRRIGESGIESVREFEKQVRVIAKIRHPNLVKVRGFYWGDDEKLVVYEYVSNGCLATTNYRRSDKFPGSSTHLPLEARFKIARGIAHGIAYIHDKKHVHGNVKPNNILLNSDMEPLISDFGLERLVFGSSRFNLGNQRPSTPGREGGGSPAGAGRFSSAYQAPESLNNLKPNPKWDVYSFGMILLELLTARVLSVSELGQWSGWNGSGMGNEERNRVVMMADVAIRGDMEGREDAMVACFKVGFGCVSFNPQKRPNMKEVVQVMDKISLAS 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9866904 9869963 + Conep08aG0113900.1 Cone8ag1108 443657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1108 751 Pfam Leucine Rich Repeat 246 264 IPR001611 GO:0005515(InterPro)
Cone8ag1108 751 Pfam Leucine Rich Repeat 219 239 IPR001611 GO:0005515(InterPro)
Cone8ag1108 751 Pfam Leucine Rich Repeat 175 195 IPR001611 GO:0005515(InterPro)
Cone8ag1108 751 PANTHER OS05G0588300 PROTEIN 197 748 IPR050994 -
Cone8ag1108 751 MobiDBLite consensus disorder prediction 613 637 - -
Cone8ag1108 751 ProSiteProfiles Protein kinase domain profile. 454 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1108 751 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515(InterPro)
Cone8ag1108 751 Gene3D Ribonuclease Inhibitor 26 193 IPR032675 -
Cone8ag1108 751 FunFam Leucine-rich repeat receptor-like protein kinase 196 290 - -
Cone8ag1108 751 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cone8ag1108 751 SUPERFAMILY Protein kinase-like (PK-like) 459 744 IPR011009 -
Cone8ag1108 751 Pfam Protein tyrosine and serine/threonine kinase 467 743 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1108 751 SUPERFAMILY L domain-like 29 285 - -
Cone8ag1108 751 Gene3D Phosphorylase Kinase; domain 1 423 529 - -
Cone8ag1108 751 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
Cone8ag1108 751 MobiDBLite consensus disorder prediction 317 342 - -
Cone8ag1108 751 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515(InterPro)
Cone8ag1108 751 FunFam Leucine-rich repeat receptor-like protein kinase 24 192 - -
Cone8ag1108 751 Gene3D Transferase(Phosphotransferase) domain 1 532 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1108 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1108 Cone-Chr8:9866904 Cone9ag1347 Cone-Chr9:10099847 3.63E-83 dispersed
Cone6ag1421 Cone-Chr6:11390191 Cone8ag1108 Cone-Chr8:9866904 1.25E-165 wgd
Cone8ag0145 Cone-Chr8:757781 Cone8ag1108 Cone-Chr8:9866904 2.82E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1108 . . . . . . . . . . . . . . . Cmo04g00508 Cmo16g00366 . . . . Cpe14g00283 Cpe01g00425 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011812 1 1 0 0 0 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83129 PF03256 ANAPC10 1.60E-74 CL0202 Cone PK