Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1109 ATGGCTTCTTTTACGCTCCGTTCGCCTTCAATTCCGAATCCATCGCTGTCTCTCTCATCCAAGCTCCCTCTCTCTTCTGCTTTCTCTGTCACTCTCCAATACCGCCGTCAACCGGCTTCACTTGTATTCGTAGTCTCGGCTGCTCTTGATGACAAGCCGACGGTCCTTGTGGCGGAGAAGCTTGGAGAAGCTGGAATCGAGCTGTTGAAGGGCTTTGCGAACGTCGATTGCTCCTACAACCTGAGCCCTGAGGAGCTCTGCACTAAGATCTCGCTCTGTGATGCTCTGATCGTGCGGAGTGGAACCAAGGTTAACCGAGATGTTTTCAAGGCTTCTGGAGGGAGGTTGAGGGTGGTTGGGAGAGCCGGAGTTGGTATTGATAATGTGGATCTGGCGGCGGCGACTGAGCATGGTTGTTTGGTGGTGAATGCGCCGACTGCGAACACTGTTGCTGCTGCCGAGCACGGGATTTCTCTCCTTGCTTCCATGGCTAGGAATGTTGCACAAGCGGATGCATCTGTTAAAGCTGGAAAGTGGCAACGTAACAAATATGTGGGTGTATCCCTTGTTGGGAAAACACTTGCTGTGATGGGGTTTGGAAAGGTAGGAACAGAAGTTGCCAGGCGAGCTAAGGGGCTTGGGATGCATGTGATAGCACACGATCCATATGCACCAGCTGATCGTGCTCGTGCGATTGGTGTGGAGCTTGTTAGTTTTGATGAAGCTATAGCAACTGCAGACTTTATCTCTCTCCATATGCCTCTTACTCCTGCTACTTCGAAAATTCTTAATGATGAGAATTTTGCAAAGATGAAGAAAGGAGTTCGGATAATTAATGTTGCTCGAGGTGGAGTTATTGACGAGGACGCCCTAGTGAAGGCACTTGATGCTGGAATTGTCGCTCAGGCGGCACTTGATGTTTTCACTGTGGAACCGCCGCCTAAAGATAGCAAGCTGGTTCAACATGAGAATGTTACTGTGACTCCCCACCTTGGTGCAAGTACTGTGGAAGCTCAGGAAGGAGTGGCGATTGAAATAGCTGAAGCTGTTGTTGGAGCCCTAAAAGGCGAGCTTGCTGCTACTGCAGTGAATGCACCAATGGTTTCTGCAGAGGTTCTTACAGAGCTGAAACCATATGTTGTACTTGCCGAAAAGCTAGGGAGGCTAGCTGTCCAACTGGTTGCAGGAGGAAGTGGTGTGAAAACTGTGAAAGTGACATACGCTTCTTCTAGATCCCCTGATGATCTGGACACCCGCCTACTCCGTGCAATGATAACCAAGGGTTTGATCGAACCCATATCAAGCACCTATGTAAACTTGGTCAATGCTGATTTTACTGCTAAACAGAGAGGCCTTAGGATAACAGAAGAACGAATCTTCCTTGATGGTTCGCCTGAGACCCCATTGGAATTTGTCCAGGTTCATATCGCCAATGTGGAGTCAAAATTCGCCAGTGCCATATCAGAGACAGGGGAGATTCAAGTTGAGGGGCGTGTAAAGGATGGAATCCCTCATTTGACAAGGGTTGGGTCGTTTGAGGTAGATGTGAGCTTAGAAGGAAGTATCATACTGTGTAGACAGGTCGACCAGCCAGGTATGATAGGAACTGTTGGGAGCATACTTGGAGAGGAGAATGTCAATGTGAGCTTCATGAGCGTTGGAAGGATTGCCCCTAGAAAGCAAGCCGTGATGGCGATTGGGGTGGACGATCAACCTAGCAAAGAGTCTTTGAAGAAGATTGGGGACATTCCGGCAATTGAGGAGTTTGTTTTCCTCAAGTTGTAG 1785 48.96 MASFTLRSPSIPNPSLSLSSKLPLSSAFSVTLQYRRQPASLVFVVSAALDDKPTVLVAEKLGEAGIELLKGFANVDCSYNLSPEELCTKISLCDALIVRSGTKVNRDVFKASGGRLRVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGISLLASMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISLHMPLTPATSKILNDENFAKMKKGVRIINVARGGVIDEDALVKALDAGIVAQAALDVFTVEPPPKDSKLVQHENVTVTPHLGASTVEAQEGVAIEIAEAVVGALKGELAATAVNAPMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKTVKVTYASSRSPDDLDTRLLRAMITKGLIEPISSTYVNLVNADFTAKQRGLRITEERIFLDGSPETPLEFVQVHIANVESKFASAISETGEIQVEGRVKDGIPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDDQPSKESLKKIGDIPAIEEFVFLKL 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9870794 9873842 + Conep08aG0114000.1 Cone8ag1109 443658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1109 594 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 194 221 IPR029752 -
Cone8ag1109 594 PANTHER FORMATE DEHYDROGENASE 1 51 365 - GO:0004617(PANTHER)|GO:0009570(PANTHER)
Cone8ag1109 594 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 375 467 IPR045626 -
Cone8ag1109 594 FunFam D-3-phosphoglycerate dehydrogenase 369 520 - -
Cone8ag1109 594 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 52 181 - -
Cone8ag1109 594 Gene3D - 521 594 - -
Cone8ag1109 594 Pfam ACT domain 522 583 IPR002912 -
Cone8ag1109 594 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 55 364 IPR006139 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone8ag1109 594 ProSiteProfiles ACT domain profile. 522 594 IPR002912 -
Cone8ag1109 594 CDD ACT_3PGDH-xct 523 594 - -
Cone8ag1109 594 Gene3D - 57 357 - -
Cone8ag1109 594 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 242 264 IPR029753 -
Cone8ag1109 594 SUPERFAMILY ACT-like 512 590 IPR045865 -
Cone8ag1109 594 FunFam D-3-phosphoglycerate dehydrogenase, chloroplastic 521 594 - -
Cone8ag1109 594 Gene3D - 148 330 - -
Cone8ag1109 594 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 333 IPR036291 -
Cone8ag1109 594 FunFam D-3-phosphoglycerate dehydrogenase 148 330 - -
Cone8ag1109 594 NCBIfam phosphoglycerate dehydrogenase 55 593 IPR006236 GO:0004617(InterPro)|GO:0006564(InterPro)
Cone8ag1109 594 FunFam D-3-phosphoglycerate dehydrogenase 2 chloroplastic 333 364 - -
Cone8ag1109 594 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 271 287 IPR029753 -
Cone8ag1109 594 CDD PGDH_4 55 357 - -
Cone8ag1109 594 Gene3D - 368 520 IPR029009 -
Cone8ag1109 594 SMART AdoHcyase_NAD_2 182 336 IPR015878 -
Cone8ag1109 594 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 158 332 IPR006140 GO:0051287(InterPro)
Cone8ag1109 594 SUPERFAMILY Serine metabolism enzymes domain 370 516 IPR029009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1109 K00058 - - csv:101221689 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0887 Cone-Chr4:6349128 Cone8ag1109 Cone-Chr8:9870794 1.44E-289 dispersed
Cone7ag0821 Cone-Chr7:6126942 Cone8ag1109 Cone-Chr8:9870794 1.52E-304 dispersed
Cone7ag1622 Cone-Chr7:11014244 Cone8ag1109 Cone-Chr8:9870794 1.78E-21 dispersed
Cone11ag0118 Cone-Chr11:532621 Cone8ag1109 Cone-Chr8:9870794 7.09E-27 transposed
Cone10ag1017 Cone-Chr10:7051523 Cone8ag1109 Cone-Chr8:9870794 0 wgd
Cone3ag0997 Cone-Chr3:28776926 Cone8ag1109 Cone-Chr8:9870794 0 wgd
Cone4ag1598 Cone-Chr4:12179712 Cone8ag1109 Cone-Chr8:9870794 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78