Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1111 ATGCCGAAGCCGACACTTTCTCTCTCCCTCCTCCCCCTCCTCCTCTTACCTCTTTTCCGGTACTCAACAGTTGAAGCTTACACTTCACCATCCGACATATCCGCCCTCAAAGCGTTTAAATCTTCGATTAAACCTTCTTCGATCCCACCATGGTCATGCTTAGCCACCTGGAATTTCTCCGCCGCCGATCCATGCTCCTTCCCTCGCCGTACCTTCTTCACCTGCGGCCTCTTCTGCAACCTCGACTCCACCACCCGAGTCACCCAACTCACCCTCGACCCAGCTGGATACTCCGGCTCACTCTCCCCACTCGTTTCCCAACTGACTCAACTCACCATTCTCGACCTCTCCGACAATTCTTTCTTTGGCCCCATTCCCTCATCCATCTCCTCCCTACTCAACCTCTTATCCCTCTCTCTCCGGTCCAACTCCTTCTCCGCCTCAATCCCTCCCTCCATAACGAACCTCAAAGCTCTCGAATCGTTGGACTTATCACACAATTTTCTCTCCGGCTCTCTCCCTCAGTCTATGAACTCGCTTTTCAGTTTACGCCGGCTCGATCTGAGCTTCAACCGGCTCACCGGTTCACTCCCTAAACTCCCACCGAACTTGCTAGAACTCGCTTTGAAGCGCAATTCACTCTCCGGCTCTCTTTACAAATCCTCCTTCGACGCGTTGCCTCTGTTGGAAGTAATCGAACTCAGTGAGAACTCGTTCACCGGTTCGTTACAATCCTGGTTCTTCCTCCTCCCGTCGGTTCAACAGGTCAACTTATCCAACAACAGCTTTACAGGCGTCGAGATCTCAAAGCCCACTGGCAATACAAGCAGCGACCTCGTGGCCGTCGATCTGGGATTCAACAGAATCGAAGGCTACGCGCCAGTTAATTTCGCGGCATTTCCATTACTATCGTCTCTATCGCTTCGTTACAACAGGTTACGTGGCAGCATCCCATTGGAGTACAGTCAGAAAACTTCGTTGAAAAGATTGTACTTGGACGGAAACTTCCTGAACGGCAAGGCGCCGGCTGGATTCTTCGCCGGAGCACCGGTTTCTGGTAGCTTAGGGGATAATTGTCTGCAGGGATGTCCAGCATCGTCGCAACTGTGCTTGCCTTCACAGAAGTCCAACTCCATTTGCAAGCAAGCTTACGCGGGTAGAAAACCAAGGTCTTGA 1176 52.04 MPKPTLSLSLLPLLLLPLFRYSTVEAYTSPSDISALKAFKSSIKPSSIPPWSCLATWNFSAADPCSFPRRTFFTCGLFCNLDSTTRVTQLTLDPAGYSGSLSPLVSQLTQLTILDLSDNSFFGPIPSSISSLLNLLSLSLRSNSFSASIPPSITNLKALESLDLSHNFLSGSLPQSMNSLFSLRRLDLSFNRLTGSLPKLPPNLLELALKRNSLSGSLYKSSFDALPLLEVIELSENSFTGSLQSWFFLLPSVQQVNLSNNSFTGVEISKPTGNTSSDLVAVDLGFNRIEGYAPVNFAAFPLLSSLSLRYNRLRGSIPLEYSQKTSLKRLYLDGNFLNGKAPAGFFAGAPVSGSLGDNCLQGCPASSQLCLPSQKSNSICKQAYAGRKPRS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9876610 9877997 - Conep08aG0114200.1 Cone8ag1111 443660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1111 391 Gene3D Ribonuclease Inhibitor 201 367 IPR032675 -
Cone8ag1111 391 SUPERFAMILY L domain-like 28 340 - -
Cone8ag1111 391 ProSiteProfiles Leucine-rich repeat profile. 182 204 IPR001611 GO:0005515(InterPro)
Cone8ag1111 391 Gene3D Ribonuclease Inhibitor 30 200 IPR032675 -
Cone8ag1111 391 SMART LRR_typ_2 226 249 IPR003591 -
Cone8ag1111 391 SMART LRR_typ_2 108 132 IPR003591 -
Cone8ag1111 391 SMART LRR_typ_2 180 207 IPR003591 -
Cone8ag1111 391 SMART LRR_typ_2 156 179 IPR003591 -
Cone8ag1111 391 SMART LRR_typ_2 250 271 IPR003591 -
Cone8ag1111 391 PRINTS Leucine-rich repeat signature 159 172 - -
Cone8ag1111 391 PRINTS Leucine-rich repeat signature 180 193 - -
Cone8ag1111 391 FunFam Nuclear pore complex protein NUP107 29 199 - -
Cone8ag1111 391 Pfam Leucine rich repeat 110 167 IPR001611 GO:0005515(InterPro)
Cone8ag1111 391 Pfam Leucine rich repeat 202 262 IPR001611 GO:0005515(InterPro)
Cone8ag1111 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 7 385 IPR053213 -
Cone8ag1111 391 Pfam Leucine Rich repeat 181 195 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1377 Cone-Chr17:9565474 Cone8ag1111 Cone-Chr8:9876610 8.14E-15 dispersed
Cone10ag1015 Cone-Chr10:7039543 Cone8ag1111 Cone-Chr8:9876610 6.27E-85 wgd
Cone3ag0994 Cone-Chr3:28750106 Cone8ag1111 Cone-Chr8:9876610 6.90E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35