Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1113 ATGGAGGGCGCATCGTACCAGCGATTTCCGAAGGTGAAGATTCGGGAGCTCAAAGACGACTATTGCAAGTTCGAGCTTCGCGACACTGACGCTAGCATGGCCAACGCGCTCCGGCGCGTGATGATTGCGGAGGTACCTACCATCGCTATCGACCTGGTTGAGATAGAGGTCAACTCCTCCGTCCTCAACGACGAGTTTATCGCCCACCGTCTCGGCCTCATTCCGTTAACCAGCGAGCGCGCCATGTCTATGCGCTTCTCCCGTGACTGTGACGCATGCGACGGTGACGGTCAGTGCGAGTTCTGCTCTGTGGAGTTTATCCTCCGCGCCAAGTGTCACTCGGACCAAACCCTAGATGTGACCAGCAAGGATCTTATGAGCTCTGATCCTACTACTGTTAATCCCGTTGATTTCTCTACTGCTACAAATGACGGAGGGGCACCTCCTGACACCAAGGGGATAACAATAGTGAAGTTACGGCGTGGGCAAGAACTGAGGCTGAGAGCCATAGCTAGGAAGGGGATTGGTAAAGATCATGCAAAGTGGTCTCCCGCAGCAACTGTCACTTTTATGTATGAGCCAAATATTCATATCAATGAAGACATGATGGAGACGTTGACTATAGAGGAGAAAAGAAGCTGGGTTGACAGCAGTCCTACCAAGGTGTTTGACATTGATCCTCTCAGCCATCAGGTTGTCGTGGTTGATCCAGAAGCATACACCTACGATGAAGAGGTAATCAAGAAAGCAGAAGCAATGGGAAAACCAGGACTGGTGGATATCTCTGCCAGAGAAGACAGCTTTATCTTCACAGTTGAATCCACCGGCGCAATCAAATCATCTCAATTAGTTCTAAATGCTATAGAGATCCTCAAACAAAAGTTGGATGCAGTACGCCTTTCAGAGGATACCGTGGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGAGGATGA 966 49.79 MEGASYQRFPKVKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFILRAKCHSDQTLDVTSKDLMSSDPTTVNPVDFSTATNDGGAPPDTKGITIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPNIHINEDMMETLTIEEKRSWVDSSPTKVFDIDPLSHQVVVVDPEAYTYDEEVIKKAEAMGKPGLVDISAREDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9884538 9887367 + Conep08aG0114400.1 Cone8ag1113 443662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1113 321 CDD RNAP_II_RPB3 10 304 - -
Cone8ag1113 321 Gene3D - 47 180 IPR036643 -
Cone8ag1113 321 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 11 302 IPR022842 GO:0003899(InterPro)|GO:0006351(InterPro)
Cone8ag1113 321 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 23 295 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Cone8ag1113 321 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 35 75 IPR001514 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cone8ag1113 321 SMART rpoldneu2 21 301 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Cone8ag1113 321 Pfam RNA polymerase Rpb3/RpoA insert domain 58 181 IPR011262 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cone8ag1113 321 Gene3D - 12 294 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Cone8ag1113 321 SUPERFAMILY RBP11-like subunits of RNA polymerase 10 302 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Cone8ag1113 321 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 46 184 IPR036643 -
Cone8ag1113 321 PANTHER DNA-DIRECTED RNA POLYMERASE 4 319 IPR050518 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0005665(PANTHER)
Cone8ag1113 321 FunFam DNA-directed RNA polymerase family protein 47 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1113 K03011 - - csv:101218763 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1240 Cone-Chr14:10027411 Cone8ag1113 Cone-Chr8:9884538 9.71E-38 transposed
Cone12ag1081 Cone-Chr12:8866343 Cone8ag1113 Cone-Chr8:9884538 2.14E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g610 . . . . . Bpe12g00297 . . . Cmo11g01387 . . . . . Cpe04g00299 . . . . . . . . . . . . . . . . Cone8ag1113 . . . . . . . . Bda15g00845 . . . . . . . . . . Car11g01113 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009530 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32