Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1114 ATGGCGATGCATCAAAATGATGAACAGACAGAACAGCATCAACAAGTCAACCCATTAATCTTGGACTCTCTCTACTGTGAAGAAGGAAAATGGGAGGAAGAAGATGAAGAACAGGAAGAAGAAGAAGAAGAAAAGAGCTCAAACGATGGGAAAAACTCATCACATTTCTTTCCTGGTCTTTTGTTAGAACAAGATCTGTTCTGGGAAGACCGTGAGCTTCTCACTCTGTTTTCCAAGGAGAGAGAACAGAAACAGAGCATTGGATCAACAGATCCGATTCTGTCTAAATCTCGACTTGAAGCAGTGGAATGGATGCTGAAAGTCAATGCCCATTACGGCTTTTCACCTCTTACTGCCATCTTAGCCGTCAACTACCTCGATAGATTCCTCCGTAGCTTCTATTTCCAGGAAGACAATCCATGGATTATCCAGCTCGTCTCTGTCACGTGCATTTCCTTAGCTGCTAAAGTTGAAGAGATCCACGTCCCGCTTCTCCTAGACCTACAGGTGGAAGATACAAAGTACATTTTTGAGGCGAAAACGATACAAAGAATGGAGCTTTTAGTGCTATCAGCTCTTCAATGGAAGATGCATCCTGTGACCCCACTTTCATTCATTGATCACATTATCAGACGGCTTGGATTGAAGACACACCTCCATTTTCACTTTCTTAAACGCTCTGAATCTCTTCTCCTCTCCCTAATCTCAGATTCAAGATTTATTGGTTATCTGCCTTCTGTGTTGGCTACTGCAACAATGATGCGAGTTGTGGATCAGATTGAGACCTGTAATCCCATCGAATATCAGGATCAGCTTCTAAGTGTTCTTAAAATAAGCAAGGTACATATTTTTTGTCTGAAACAGGAAGAAGTAAAAGACTGTTATGACCTCATACTTGAGGTATCTTCATTGTCTTCATATTCTTGTTCAGAAAAGTCCAATGTTGTCATAAAAAACATGATAAACCCTTCCCTGAAGAGAAAGTATGAGCATGAGGAGGAATTCAGTAGCAGCCGCAGCAGCCCAAGAGGCGTTTATGATGCTGTCTTCAACTCTGATAGCTCCAATGATTCCTGGGATGCGGTGGGGCCCTCATCATCAATTGTTTACTCCTCTGCAGATCCTCCGTTTAAGAAGATCCGACCCGGAGAAGACCAGCCCATGAAACTGCCGTCCGCCCTCCGACGGGTCTTTGTCGACATTGTTGGCAGCCCTCCGTAA 1221 43.49 MAMHQNDEQTEQHQQVNPLILDSLYCEEGKWEEEDEEQEEEEEEKSSNDGKNSSHFFPGLLLEQDLFWEDRELLTLFSKEREQKQSIGSTDPILSKSRLEAVEWMLKVNAHYGFSPLTAILAVNYLDRFLRSFYFQEDNPWIIQLVSVTCISLAAKVEEIHVPLLLDLQVEDTKYIFEAKTIQRMELLVLSALQWKMHPVTPLSFIDHIIRRLGLKTHLHFHFLKRSESLLLSLISDSRFIGYLPSVLATATMMRVVDQIETCNPIEYQDQLLSVLKISKVHIFCLKQEEVKDCYDLILEVSSLSSYSCSEKSNVVIKNMINPSLKRKYEHEEEFSSSRSSPRGVYDAVFNSDSSNDSWDAVGPSSSIVYSSADPPFKKIRPGEDQPMKLPSALRRVFVDIVGSPP 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9891151 9893094 - Conep08aG0114500.1 Cone8ag1114 443663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1114 406 CDD CYCLIN_AtCycD-like_rpt1 98 195 - -
Cone8ag1114 406 Gene3D - 199 287 - -
Cone8ag1114 406 SMART Cyclin_C_2 200 342 IPR004367 -
Cone8ag1114 406 FunFam CYCLIN D32 199 296 - -
Cone8ag1114 406 ProSitePatterns Cyclins signature. 98 129 IPR048258 -
Cone8ag1114 406 MobiDBLite consensus disorder prediction 368 387 - -
Cone8ag1114 406 PANTHER CYCLINS 56 300 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone8ag1114 406 MobiDBLite consensus disorder prediction 30 44 - -
Cone8ag1114 406 MobiDBLite consensus disorder prediction 1 19 - -
Cone8ag1114 406 Pfam Cyclin, N-terminal domain 80 197 IPR006671 -
Cone8ag1114 406 SMART cyclin_7 103 191 IPR013763 -
Cone8ag1114 406 Pfam Cyclin, C-terminal domain 200 308 IPR004367 -
Cone8ag1114 406 MobiDBLite consensus disorder prediction 30 54 - -
Cone8ag1114 406 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag1114 406 FunFam D3-type cyclin 91 198 - -
Cone8ag1114 406 CDD CYCLIN_AtCycD-like_rpt2 200 298 - -
Cone8ag1114 406 Gene3D - 92 198 - -
Cone8ag1114 406 SUPERFAMILY Cyclin-like 67 198 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0862 Cone-Chr17:6835105 Cone8ag1114 Cone-Chr8:9891151 2.23E-90 dispersed
Cone6ag1538 Cone-Chr6:12087182 Cone8ag1114 Cone-Chr8:9891151 7.94E-39 dispersed
Cone7ag1340 Cone-Chr7:9752814 Cone8ag1114 Cone-Chr8:9891151 4.59E-36 dispersed
Cone8ag0642 Cone-Chr8:6340215 Cone8ag1114 Cone-Chr8:9891151 4.61E-32 dispersed
Cone8ag1114 Cone-Chr8:9891151 Cone9ag1454 Cone-Chr9:10785867 7.13E-35 dispersed
Cone12ag1080 Cone-Chr12:8861641 Cone8ag1114 Cone-Chr8:9891151 9.24E-172 wgd
Cone20ag0209 Cone-Chr20:896176 Cone8ag1114 Cone-Chr8:9891151 1.55E-103 wgd
Cone7ag1351 Cone-Chr7:9821020 Cone8ag1114 Cone-Chr8:9891151 1.76E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1114 K14505 - rcu:8288141 396.741