Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1115 ATGAGTAGCTTCCATTGTTCTGCTCTGTTTCTTCTTCCACTTTTCTTAACTCTATTTTCATGTCAGCCTTATGAAGTTGCCACCGTTAATGTGATGTATGGAGTAAACAGAGAAGCATTGGAAGTTATCACAGGAGGAGGCGGAGGAGGTGGCGGCGGCGGAGCTCATGCAGGTGGTGGAGGCTTTGCACTTTGTCCACCGTCAACTCCGCCGCCACCTCCGCCGCCACCTCCGCGACGGATGTTCATCAACAAGCGAATAGAAAAGTCATACCACATAATTCATAAACTCAAATCGAAGGTCAAGCACGATCCAAAAGGAATCACAAAGACATGGCAAGGCACAAACGTCTGCAACTACGCCGGATTCCTCTGCTATAAAAATCCAGCACACAAGGAAACGGTGATCGCCGGAGTAGACTTCAACGGCTTTTCCCTAGCCGGCCCCGACCTCGCCCTCGCCGGCTTCCTCGACGAATTACCAGACCTCAATGTCTTCCACGCAAACTCCAACCATTTCCTCGGCGGTCTCCCTAATAGAATCGACAAGCTCCGTTACTTCGCCGAGATCGACCTCAGCAACAACAAATTATCCGGCGCGTTTCCGATTCAAATTCTAGCCGCCACGAATCTAACCTTCTTAGATCTCCGGTTCAACAGCTTCTCCGGTTCAATTCCACCCCAAATTTTCAGTCTAGATGTGAACGCCATTTTTATCAACAACAACAGATTTAACCAACCGCTTCCTTCCAATATCGGTTCAACTCCGGCCCCTTACCTCACTTTCGCTAACAACGAGTTCACTGGGCCGATTCCAAAGAGCATTGGGCTTGGGCTTGCTAGAGGAAATCTCGTTGAGGTACTTTTCTTAAACAATAAGCTTTCAGGGTGCTTGCCGTATGAAATGGGCCTGTTGGAAAAAGCCGCTTTGTTGGATATGAGCAAGAACCGGCTAACAGGCCCAATACCACACTCTTTTGCATGTTTGGGCGGGATGGAGGTTCTGAACTTGGGAGAGAATCAGTTTTATGGGCCGGTACCTGAGGTTGTCTGCAAGTTACCTAAGCTTAGGAACTTGACGCTGAGAAATAATTACTTCACAGAAGTTGGGCCTGAATGCAGAAATCTGATACAGAATGGGATTGTTGATATTTCAAAGAACTGCATTTTGGACCTGCCGGGCCAGAGATCAAAGGGTGAATGTGAAGAATTTTTGTTGAGGCCCAAATACTGTCAGAATGAGAAGTGGCTTGCCTACATTCCTTGCAAGAAGAACTGCTATTTAAATCAGTCCAACTGCAGTTCTGATCCTAGTCGTCCAGTATCTTCCTCGCCTAGTTCAATGAGGTCTTATGGGGCCCTCATACCCCACTGA 1374 47.82 MSSFHCSALFLLPLFLTLFSCQPYEVATVNVMYGVNREALEVITGGGGGGGGGGAHAGGGGFALCPPSTPPPPPPPPPRRMFINKRIEKSYHIIHKLKSKVKHDPKGITKTWQGTNVCNYAGFLCYKNPAHKETVIAGVDFNGFSLAGPDLALAGFLDELPDLNVFHANSNHFLGGLPNRIDKLRYFAEIDLSNNKLSGAFPIQILAATNLTFLDLRFNSFSGSIPPQIFSLDVNAIFINNNRFNQPLPSNIGSTPAPYLTFANNEFTGPIPKSIGLGLARGNLVEVLFLNNKLSGCLPYEMGLLEKAALLDMSKNRLTGPIPHSFACLGGMEVLNLGENQFYGPVPEVVCKLPKLRNLTLRNNYFTEVGPECRNLIQNGIVDISKNCILDLPGQRSKGECEEFLLRPKYCQNEKWLAYIPCKKNCYLNQSNCSSDPSRPVSSSPSSMRSYGALIPH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9899313 9901197 + Conep08aG0114600.1 Cone8ag1115 443664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1115 457 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 277 369 - -
Cone8ag1115 457 MobiDBLite consensus disorder prediction 434 457 - -
Cone8ag1115 457 Gene3D Ribonuclease Inhibitor 87 281 IPR032675 -
Cone8ag1115 457 MobiDBLite consensus disorder prediction 434 450 - -
Cone8ag1115 457 SUPERFAMILY L domain-like 102 390 - -
Cone8ag1115 457 Gene3D Ribonuclease Inhibitor 282 435 IPR032675 -
Cone8ag1115 457 Pfam Leucine Rich Repeat 311 329 IPR001611 GO:0005515(InterPro)
Cone8ag1115 457 Pfam Leucine Rich Repeat 210 232 IPR001611 GO:0005515(InterPro)
Cone8ag1115 457 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 79 427 IPR051582 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0990 Cone-Chr3:28702515 Cone8ag1115 Cone-Chr8:9899313 1.45E-55 dispersed
Cone7ag1161 Cone-Chr7:8666010 Cone8ag1115 Cone-Chr8:9899313 5.73E-20 dispersed
Cone8ag1115 Cone-Chr8:9899313 Cone8ag1116 Cone-Chr8:9902230 3.45E-47 tandem
Cone10ag1008 Cone-Chr10:6964648 Cone8ag1115 Cone-Chr8:9899313 8.29E-45 wgd
Cone12ag1078 Cone-Chr12:8852791 Cone8ag1115 Cone-Chr8:9899313 1.87E-148 wgd
Cone20ag0204 Cone-Chr20:878474 Cone8ag1115 Cone-Chr8:9899313 3.50E-38 wgd
Cone3ag0989 Cone-Chr3:28688154 Cone8ag1115 Cone-Chr8:9899313 5.30E-56 wgd
Cone4ag1593 Cone-Chr4:12161991 Cone8ag1115 Cone-Chr8:9899313 2.03E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90