Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1116 ATGTTTCAACCAATTAAGAACTTAACTCGTATTTCCATCCTCTTACTCCCATTATACTTCCTCACAACACATTCCCTCATCACAGAATTATTAACCCCATTACCATCCCCATCTCTTGGGCCGGAATCCATCTTCAACTTCCTCGACACGAGACTCGCCCTTGTCTACTCCACAATCCAAACCTTCAAGAACACGATCACATCCGACCCCCTCGGAATCACCGAAACATGGACAGGGCCCGACATATGCAGCTACGAGGGCTTCTTTTGCGACAACCCGCCCGACAACCTCAGCGCAACTACAGTTGCCGCCATCGATTTCAATGGCTTCCATCTTGCAGCCCCCACTCTCGACGGCTTCATCGACCAACTACCCGATCTCGCTCTCTTCCATGCAAACTCCAACAACTTTTCAGGCACTATTTCACCCAATATTTCGAAACTGCGATATTTCTTCGAGCTCGACGTAAGCAATAACTTGTTATCTGGAACGTTCCCAACCGCAGTTATCGGCATGAACGGGTTGATATTTCTGGATATTCGTTACAATTCTTTTACTGGGTCTGTTCCTCCTCAAATTTTCCTGCAAACTCTAGCCTTACTATTCATTAACAACAACAATTTCATCCTGAAACTCCCTGACAACCTCGGTTCCACGACAGCTTCTTATCTCACGTTGGCCAATAACAAATTCACAGGTCCAATCCCGAAAAGCATTGGAGATGCATCTTCGACTCTGATTGAGGTCTTGTTCTTAAACAATTTGCTGACTGGTTGTTTACCTTACGAGATAGGGTTTCTAAGAAACGCCACCGTCTTTGATGCGGGAGACAACTTGTTGACTGGTCCGTTACCGTGTTCGTTAGGGTGTCTAGAGAAAATCGAGCAGTTGAATTTCGCGGGAAATTTCCTGTACGGTCAGGTTCCAGAAGAGATATGTGCGCTTGGGAACTTGGCTAATCTTTCGCTGTCTGATAATTATTTTACGAAGGTGGGGCCGATTTGTAGGAAGATGATTAGAGACGGAGTGCTTGATGTGAGGAAGAATTGCATTCATCATCTTTCTCTGGCTGATCAGAGATCAGTACATGAGTGTTTCTTGTTCTTCCTACATCCTATTCATATCTGTCCACACCCGGAATTATTTGGTGTCGTTCCGTGCAAGGCTCACGATCCGATGCATCATTGGATGAATAGAACGGCCGGTAGTAGTAGTTCCGTTACTTATACTGCTACGCATTCAAGACATAGATTGTGA 1257 45.35 MFQPIKNLTRISILLLPLYFLTTHSLITELLTPLPSPSLGPESIFNFLDTRLALVYSTIQTFKNTITSDPLGITETWTGPDICSYEGFFCDNPPDNLSATTVAAIDFNGFHLAAPTLDGFIDQLPDLALFHANSNNFSGTISPNISKLRYFFELDVSNNLLSGTFPTAVIGMNGLIFLDIRYNSFTGSVPPQIFLQTLALLFINNNNFILKLPDNLGSTTASYLTLANNKFTGPIPKSIGDASSTLIEVLFLNNLLTGCLPYEIGFLRNATVFDAGDNLLTGPLPCSLGCLEKIEQLNFAGNFLYGQVPEEICALGNLANLSLSDNYFTKVGPICRKMIRDGVLDVRKNCIHHLSLADQRSVHECFLFFLHPIHICPHPELFGVVPCKAHDPMHHWMNRTAGSSSSVTYTATHSRHRL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9902230 9903510 + Conep08aG0114700.1 Cone8ag1116 443665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1116 418 SUPERFAMILY L domain-like 60 351 - -
Cone8ag1116 418 Gene3D Ribonuclease Inhibitor 250 340 IPR032675 -
Cone8ag1116 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 43 387 IPR051582 -
Cone8ag1116 418 Gene3D Ribonuclease Inhibitor 56 249 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1116 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0857 Cone-Chr17:6799762 Cone8ag1116 Cone-Chr8:9902230 1.45E-61 dispersed
Cone20ag0204 Cone-Chr20:878474 Cone8ag1116 Cone-Chr8:9902230 1.10E-60 dispersed
Cone3ag0989 Cone-Chr3:28688154 Cone8ag1116 Cone-Chr8:9902230 4.31E-70 dispersed
Cone4ag1593 Cone-Chr4:12161991 Cone8ag1116 Cone-Chr8:9902230 1.08E-100 dispersed
Cone8ag1115 Cone-Chr8:9899313 Cone8ag1116 Cone-Chr8:9902230 3.45E-47 tandem
Cone10ag1007 Cone-Chr10:6961823 Cone8ag1116 Cone-Chr8:9902230 3.51E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003062 1 2 0 1 1 1 2 2 2 2 2 1 1 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 52