Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1118 ATGGCGGATCCAGACCGTCCAGTAGAAATGGTGTTCTTACCGTTCGTAGGTGGGGGCCACCAAATCCCCATGATTGACATGGCCAGAGTCCTCGCTTCCCACAAAGCCAAATCCGTAATCATAGCAACTCCACGCTCCGCCGTTCAGTTTCAAAACACCATTCGCCGGGATCAAATCTCTGGCCAATCGATCTCCATTCACGTCCTTGAATTACCAGAAAACGCAGAGATACCAGACGCCGACATGTCGGCTGCTCCCTTCACTGACACTTCTATTCTCAAAGACCCACTTATTCTTTACCTCTCCAAAACCCGACCCGATTGTGTCGTCCTCGATACGTTTAATCGCTGGGCATCTGACGTCATAGACCAACTCAAGATTCCCATGCTCGTCTTCAACGGAAACTGCTGCTTCTCCGGCTGCGTCGGCCACTGCCTTAATAAGCACGAGACGCACGACAAAGTCGGATCGGATCTTGAACCGTTTGTGGTTCCGGATCTTCCGGATCGGATCGTTCTGACCAGGTCTCAGCTTCCTGTTTTTGTTAGACGAAAAACACGGGAGATGAGGTTTGGATCTGGAAAAACAGAGGGGAAGGAATTTGGAAGTTTAGTCAACAGTTTCTACGAGCTTGAACCGGATTATGTCGAGTTCCGTAAGAGAGAGATGGGAAAGAGAGTGTGGCTAGTGGGGCCTGTGTCGTTGTGTAATAGAAATGCAGAAGATAAAGCAGAGAGAGGTCAACAAGCCGCCATTGATGAGCACAGCTGTTTGACCTGGTTAAACTCTAAAGAACCCAATTCCGTGCTTTACATCAGTTTCGGAAGCTTAGCTCGCTTGCCTCCTCAACAGGTTCGAGAAATCGCGTACGGTCTAGAAGCTTCCAACTGTCAGTTCATCTGGGTAATCGGTAAAATCCTAGAATCCGCCGTGGATGAGGAAGCAGAGCTGTTTCCTTCTGGATTCGTAAAGAAAATGGAAGAGTCGAAGAAGGGGTTGATAATTAAGGGATGGGCCCCACAGATACTGATATTAGAGCACTCTGCCGTCGGAGGGTTTTTGACTCACTGTGGATGGAACTCTACCCTGGAAGGCGTGACGGCCGGAGTTCCGATGCTGACGTGGCCGGTGTCGGCGGAGCAGTTCTTCAACGAGAAGCTGGTGACGGATGTGTTGGGAATTGGGGTTCAAATTGGGAGTAAGGAATGGGGGTCGTGGAATGACCATAGGCCGGTGATAGGGAGAGAGAATGTGGAGGCGACTGTGAAGAGGTTGATGGACGGGGGCGATGAGGCGGCGAAGATGAGAAGGAAAGCGCGGGAGCTTGGTGAAAAGGCCAAGAGAGCGGTTGAAGAAGGTGGGTCGTCGTATAGAGATGCTGATGGGTTAATTTCAGAGCTGAAGTCACTACGCAAAAACTAA 1422 50.35 MADPDRPVEMVFLPFVGGGHQIPMIDMARVLASHKAKSVIIATPRSAVQFQNTIRRDQISGQSISIHVLELPENAEIPDADMSAAPFTDTSILKDPLILYLSKTRPDCVVLDTFNRWASDVIDQLKIPMLVFNGNCCFSGCVGHCLNKHETHDKVGSDLEPFVVPDLPDRIVLTRSQLPVFVRRKTREMRFGSGKTEGKEFGSLVNSFYELEPDYVEFRKREMGKRVWLVGPVSLCNRNAEDKAERGQQAAIDEHSCLTWLNSKEPNSVLYISFGSLARLPPQQVREIAYGLEASNCQFIWVIGKILESAVDEEAELFPSGFVKKMEESKKGLIIKGWAPQILILEHSAVGGFLTHCGWNSTLEGVTAGVPMLTWPVSAEQFFNEKLVTDVLGIGVQIGSKEWGSWNDHRPVIGRENVEATVKRLMDGGDEAAKMRRKARELGEKAKRAVEEGGSSYRDADGLISELKSLRKN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9910162 9912540 - Conep08aG0114900.1 Cone8ag1118 443667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1118 473 CDD GT1_Gtf-like 11 449 IPR002213 GO:0008194(InterPro)
Cone8ag1118 473 PANTHER GLYCOSYLTRANSFERASE 9 468 - GO:0035251(PANTHER)
Cone8ag1118 473 Coils Coil 432 452 - -
Cone8ag1118 473 Gene3D Glycogen Phosphorylase B; 242 448 - -
Cone8ag1118 473 MobiDBLite consensus disorder prediction 435 455 - -
Cone8ag1118 473 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 465 - -
Cone8ag1118 473 FunFam Glycosyltransferase 258 451 - -
Cone8ag1118 473 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 92 391 IPR002213 GO:0008194(InterPro)
Cone8ag1118 473 ProSitePatterns UDP-glycosyltransferases signature. 338 381 IPR035595 -
Cone8ag1118 473 Gene3D Glycogen Phosphorylase B; 11 459 - -
Cone8ag1118 473 MobiDBLite consensus disorder prediction 435 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1118 K14595 - - rcu:8288174 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0545 Cone-Chr8:4027246 Cone8ag1118 Cone-Chr8:9910162 1.08E-52 dispersed
Cone8ag1118 Cone-Chr8:9910162 Cone8ag1120 Cone-Chr8:9917260 5.51E-163 dispersed
Cone8ag1117 Cone-Chr8:9904155 Cone8ag1118 Cone-Chr8:9910162 1.02E-106 tandem
Cone8ag1118 Cone-Chr8:9910162 Cone8ag1119 Cone-Chr8:9913310 2.19E-161 tandem
Cone12ag1076 Cone-Chr12:8847990 Cone8ag1118 Cone-Chr8:9910162 5.45E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1118 . Cone10ag1005 . . . . . . . Bda01g01606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000030 8 18 6 6 7 16 1 17 9 18 10 14 10 15 18 12 16 19 2 13 14 14 11 16 7 17 19 18 10 3 364