Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1121 ATGGCTCAGGTTCAGTCTCAGCCTCAAAATGCGGGTCCTGGTGCTAACCCCGCCGCTAATGGTGGTGGAGCCAACCAGTTCGGGACTACGTCCATGTACGTTGGAGATCTTGATCCGAATGTGACGGATTCGCAGCTTTTTGACCTTTTCAGTCAGGTCGGTCAGGTCGTTTCGGTTAGGGTTTGCAGGGACTTGACGACTCGACGATCTCTGGGTTATGGATACGTCAACTATGGCAACCAACAAGAGGCGGCTAGGGCATTGGATGTGCTGAACTTCACTCCTCTGAATGGGAGGCCCATAAGAATTATGTATTCTCACCGTGACCCTAGTATCCGAAAAAGTGGAACTGGAAATATATTCATCAAGAATCTGGACAAGGCGATTGACCACAAAGCACTACAGGACACATTTTCTGCCTTCGGGAATGTTCTGTCTTGCAAGGTTGCCACGGATTCATCTGGACAGTCTAAAGGCTATGGTTTTGTGCAATTTGACAGTGAGGAATCTGCACAAAAAGCAATAGAGAGGCTGAATGGAATGCTGTTGAACGATAAGCAAGTCTTTGTTGGACCTTTCCTCCGTAAGCATGAAAGAGAAAGTGAAATTGGAAATTCGAAATTTAACAATGTCTTTGTAAAGAATCTCTCTGATTCCATGAATGAAGAAGATTTGAAGAAGAGTTTTGGCGAATTTGGACCACTCACTAGTGTTGTCATTATGAGGGATGCAGATGGTAAATCAAGATGCTTTGGGTTTGTGAACTTTGATAATACAGATGATGCTGCTAATGCTGTTGAGGAACTTAATGGGAAAAAAATTGATGGGAAGGAGTGGTTTGTTGGGAAAGCCCAGAAGAAATCTGATAGGGAAGTTGAATTGAAACAAAAATTCGAGCAAAGTATGAAAGAGACAGCTGACAAATTTCAGGGTGCTAACTTGTATGTCAAAAACTTAGATGATAGCATAACTGATGAAAAACTTGCAGAGCTCTTCGCCCCATTTGGCACCATTACCTCATGCAAGGTAATGAGAGACCCTAATGGAATAAGTAGAGGATCTGGTTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAAAGCTCTTGCTGAGATGAATGGAAAAATGGTTGTAAGCAAACCTCTGTATGTGGCAGTTGCACAGAGGAAAGAAGAGAGAAGGGCAAGGTTGCAGGCACAGTTTTCTCAAATGCAGCCGGTTGCAATGCCTCCTTCTGTTGCTCCTCGCATGCCAATGTACCCCCCTGGTGGGCCAGGTATGGGACAACAGTTATTTTACGGCCAAGCTCCACCTGCAATGATTCCTTCCCAGCCCGGCTTTGGCTATCAACAACAACTTGTTCCTGGAATGAGGCCTGGTGGGGGCCCCATGCCCAATTTCTTTGTACCAATGGGTCAGCAGGGTCAACGCCCAGGTGGCAGACGTGCTGGACCTGTCCAACAAAGCCAGCAACCTGTTCCACTAATGCAGCAACAAATGTTCCCAAGGGGGCGGGTCTACCGTTATCCCCCTGGGCGGGGCCTACCTGATGTCCCTATGCCAGGAGTTGCTGGAGGCATGTTCTCTGTCCCATATGACATGGGTGGAATGCCTCTCCGCGAGGCTCCACCTCACAATCAGCCAATCCCAATCAGTGCTTTGGCCACTTCTCTTGCAAATGCTTCTCCCGAACAGCAGAGAACGATGCTGGGTGAGAGTCTATACCCACTTGTGGATCAGCTGGAGCCAGAGAATGCGGCTAAGGTTACAGGGATGCTTCTGGAAATGGATCAGACAGAGGTTTTGCATTTGCTGGAGTCTCCGGAAGCTTTGGCGGCTAAGGTGGCAGAGGCTATGGATGTTCTGAGGAATGTTGCTCAGCATCAACAGGCTGGGAATGCAGCTGATCAGCTCGCTTCTCTGTCGCTGAACAACAACCTCGATTCCTGA 1950 47.74 MAQVQSQPQNAGPGANPAANGGGANQFGTTSMYVGDLDPNVTDSQLFDLFSQVGQVVSVRVCRDLTTRRSLGYGYVNYGNQQEAARALDVLNFTPLNGRPIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALQDTFSAFGNVLSCKVATDSSGQSKGYGFVQFDSEESAQKAIERLNGMLLNDKQVFVGPFLRKHERESEIGNSKFNNVFVKNLSDSMNEEDLKKSFGEFGPLTSVVIMRDADGKSRCFGFVNFDNTDDAANAVEELNGKKIDGKEWFVGKAQKKSDREVELKQKFEQSMKETADKFQGANLYVKNLDDSITDEKLAELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALAEMNGKMVVSKPLYVAVAQRKEERRARLQAQFSQMQPVAMPPSVAPRMPMYPPGGPGMGQQLFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGGPMPNFFVPMGQQGQRPGGRRAGPVQQSQQPVPLMQQQMFPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLREAPPHNQPIPISALATSLANASPEQQRTMLGESLYPLVDQLEPENAAKVTGMLLEMDQTEVLHLLESPEALAAKVAEAMDVLRNVAQHQQAGNAADQLASLSLNNNLDS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9919319 9922786 + Conep08aG0115200.1 Cone8ag1121 443670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1121 649 Gene3D - 293 402 IPR012677 -
Cone8ag1121 649 Gene3D - 1 118 IPR012677 -
Cone8ag1121 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 CDD RRM4_I_PABPs 311 389 - -
Cone8ag1121 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 623 IPR006515 GO:0003723(InterPro)
Cone8ag1121 649 SUPERFAMILY PABC (PABP) domain 490 643 IPR036053 GO:0003723(InterPro)
Cone8ag1121 649 FunFam Polyadenylate-binding protein 295 400 - -
Cone8ag1121 649 CDD RRM3_I_PABPs 208 287 - -
Cone8ag1121 649 FunFam Polyadenylate-binding protein 116 199 - -
Cone8ag1121 649 SMART rrm1_1 31 104 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 SMART rrm1_1 210 282 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 SMART rrm1_1 313 385 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 SMART rrm1_1 119 191 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 Gene3D - 119 191 IPR012677 -
Cone8ag1121 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 Gene3D - 194 292 IPR012677 -
Cone8ag1121 649 SMART poly_2 562 625 IPR002004 GO:0003723(InterPro)
Cone8ag1121 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723(InterPro)
Cone8ag1121 649 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676(InterPro)
Cone8ag1121 649 SMART rrm2_1 119 191 IPR003954 GO:0003676(InterPro)
Cone8ag1121 649 SMART rrm2_1 31 104 IPR003954 GO:0003676(InterPro)
Cone8ag1121 649 SMART rrm2_1 313 385 IPR003954 GO:0003676(InterPro)
Cone8ag1121 649 SMART rrm2_1 210 282 IPR003954 GO:0003676(InterPro)
Cone8ag1121 649 Pfam RNA recognition motif 120 187 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 Pfam RNA recognition motif 211 278 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 Pfam RNA recognition motif 33 102 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 Pfam RNA recognition motif 314 382 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 SUPERFAMILY RNA-binding domain, RBD 207 294 IPR035979 GO:0003676(InterPro)
Cone8ag1121 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723(InterPro)
Cone8ag1121 649 PANTHER RNA BINDING PROTEIN 20 210 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone8ag1121 649 CDD RRM1_I_PABPs 31 110 IPR034364 -
Cone8ag1121 649 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723(InterPro)
Cone8ag1121 649 Gene3D - 546 629 - -
Cone8ag1121 649 FunFam Polyadenylate-binding protein 546 628 - -
Cone8ag1121 649 FunFam Polyadenylate-binding protein 200 294 - -
Cone8ag1121 649 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag1121 649 FunFam Polyadenylate-binding protein 16 115 - -
Cone8ag1121 649 SUPERFAMILY RNA-binding domain, RBD 310 404 IPR035979 GO:0003676(InterPro)
Cone8ag1121 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0552 Cone-Chr14:2738466 Cone8ag1121 Cone-Chr8:9919319 2.61E-31 dispersed
Cone15ag0571 Cone-Chr15:2885471 Cone8ag1121 Cone-Chr8:9919319 3.76E-31 dispersed
Cone17ag0374 Cone-Chr17:1772070 Cone8ag1121 Cone-Chr8:9919319 1.86E-13 dispersed
Cone18ag0779 Cone-Chr18:4429102 Cone8ag1121 Cone-Chr8:9919319 3.85E-14 dispersed
Cone3ag0985 Cone-Chr3:28639047 Cone8ag1121 Cone-Chr8:9919319 0 dispersed
Cone4ag1461 Cone-Chr4:11550661 Cone8ag1121 Cone-Chr8:9919319 3.67E-213 dispersed
Cone7ag1475 Cone-Chr7:10366037 Cone8ag1121 Cone-Chr8:9919319 1.34E-213 dispersed
Cone8ag0590 Cone-Chr8:4950653 Cone8ag1121 Cone-Chr8:9919319 1.56E-08 dispersed
Cone8ag1121 Cone-Chr8:9919319 Cone18ag1067 Cone-Chr18:7849050 1.35E-08 dispersed
Cone19ag1215 Cone-Chr19:8459986 Cone8ag1121 Cone-Chr8:9919319 1.05E-128 transposed
Cone10ag1002 Cone-Chr10:6851848 Cone8ag1121 Cone-Chr8:9919319 0 wgd
Cone12ag1075 Cone-Chr12:8843279 Cone8ag1121 Cone-Chr8:9919319 0 wgd
Cone3ag0982 Cone-Chr3:28625860 Cone8ag1121 Cone-Chr8:9919319 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1121 K13126 - mdm:103428218 986.097