Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1122 ATGGACCACAAGGCATGGCATTTGAGGAGAAAGTCCTCTGAGAATTTGATAGTTACAGCCGGCGCCGACAAAGTGGTTATTAGTCCTTTAAGAAATTTTGAAGAAGAGGAAAACGAAATAGGTTCAGAGATATGTAAGAATAATCTAAGTGAGAAGTTAGCTTCTGTCCTCCTTGATTGTCATGGCAAAGGTGACTCTGAAACAAAAAAAGATAAAAGATTTTCCCCAGCAGCTGTTGCAGGCATAGAAGAAGACACAATGATGATAAAGAAAGAACTAGATGACACTCTAAGTCAGGAAAGAGCTGCAAGCAAAAAATTAAACAACATGGAAATGGAACAGGCCAGTGAGCCTAAGCAGCAACTAAGCTGCGTTGAAGTTGAACAAGAAAAAAGAATATGTGGTGCCGTTCTGGAAAAATCAAGAGAACGTGACAAGGAAATGAAAAAAATGGAGGAGAAATTGAAAGAAACCAGAAAGCAGCTTGCAAGCTTAGCTACTGAAAATACCCGTCAGAGCAAAGCTCTTCTATCGAAAGAGAAACTGATAGAAGATCTTCATAAGCACAATTCTCAAGTCCATTTGGAATTCAATGCACTCATGGCTAGATTAGATTCCACAGAAAAGGAAAACACATTTCTAAAGTACGAGTTTTGTATGCTTGAAAAAGAGCTTGAATTCCGGAATGAGGACTTGGAATATGTCCATCAATCTGCTGACTCATCACGCAAGCATCATCTCGACAGTGTGAAGAAGATCACAATGTTAGAAGCAGAATGTGAAAGACTCCGTGTCTTTATGCAAAAGCGGGTTCCGGGTCCCACCACTCCTCTAGCGAGACGAAAGCAGAGCATAAACAGAGAATTGATTGTTAGAAGAACTCCCAGTTTGGACAATAATGAAATTACAGGTCAGAAAATCAGCTTCTTGATTGAGAGGTTGAGGGGTATGGAAGATGAAAACAGGGCTCTGAAGGAAATCATATGCAAAAAGAGTTCAAGATTATATCAGGTGGAGAAATGCAGTGATGATGGTGTAAGTTCATCTGGGTCATGGGCTAATGATTTAATGTCTGAGTTGGAAATTTTCGGGTGCAAGAAATTTGAACAGAAGGGTTTAGATATTAATAAGGACATGAGCTTAATGGATGATTTTGTAGAGATGGAGAAACTGGCAATAGCTTCAGTAAAGGATCTAGTAACAGTTTCAGAAGTTGATTCATGTTCCTATAATATTACGGGAAATCCATTTGATTGGCTGCAGATTGTTCTAAATGCGATGCTGGAGCAAAAACGGATTTCCAATCGGAGCCTTGAGGAACTTTTCAGAGACATTAAGATTGCTTTGGGGTTTATAAATAATCCGGCTAGTCATGAGCAGGATCTTCTGTTGCTTTTGAAAGAAGAAAATATAAAACTGAAAGATGAAATGAAGAGTATGGAATGTGCTAAAAATGATGTGGAAGTTAGGTTAAAGGCAGCAGATGAAGAGCGCAATGCCTTGAGGGTAGAGCTCGAGATATTACGTGAATCAAATGGATTAACTGAAGACCAGTTTGAAAATCAAAAGTTGGCTAATGAGGAACTTGATACTCAACTTACAGTAACCAAAGCTGAGTTGAATGGAATGTTCCAGAAGTTTTCGTCTTTGGAAGTTGAATTGGACGATAAGAGTAATTGCTGTGAAGAACTAGAAGCTACATGCCTTGAACTTCAACTCCAGCTAGAAAGCATGGCAAAGAAGGAAACTCCGAAGAACATCATGAATCAAAAGGAAGAAAAATCTGAAACTGGTTGGGAGATTACATCGGCTTCAGCAAAGTTAGCGGAATGCCAAGAAACCATCATTAGCCTTGGAAAGCAATTGAAAGCATTGGCTTCACCAAGAAGGGAAAAGGTAGTAAAATATGAACCTTTCTCTACCTCTACCGCCGATGTTAAGATTATGAATAAACGCACCTCCCTTCGAGATAAAATGCTAGCTGAGGATGAAAATAAGCTGCTTGTTCTATCATCTCCTAAGGTTGAGGAAGAAACAATCACTGGAGAATCAAATAAACTGTTGTCTAAAAATGACGAGGCGGATTCTATAGGATCAAAGCAGAAGGCGGGGGCTGTGGCAATTGTGCCGAGTAAAAAACAAGGGGGGTTTAGTCTATTGAGGAAATTGCTGTTGAGAAGAAAGAAAAGCAGTGGCAAGAAGAGTGGAAGATGA 2214 39.52 MDHKAWHLRRKSSENLIVTAGADKVVISPLRNFEEEENEIGSEICKNNLSEKLASVLLDCHGKGDSETKKDKRFSPAAVAGIEEDTMMIKKELDDTLSQERAASKKLNNMEMEQASEPKQQLSCVEVEQEKRICGAVLEKSRERDKEMKKMEEKLKETRKQLASLATENTRQSKALLSKEKLIEDLHKHNSQVHLEFNALMARLDSTEKENTFLKYEFCMLEKELEFRNEDLEYVHQSADSSRKHHLDSVKKITMLEAECERLRVFMQKRVPGPTTPLARRKQSINRELIVRRTPSLDNNEITGQKISFLIERLRGMEDENRALKEIICKKSSRLYQVEKCSDDGVSSSGSWANDLMSELEIFGCKKFEQKGLDINKDMSLMDDFVEMEKLAIASVKDLVTVSEVDSCSYNITGNPFDWLQIVLNAMLEQKRISNRSLEELFRDIKIALGFINNPASHEQDLLLLLKEENIKLKDEMKSMECAKNDVEVRLKAADEERNALRVELEILRESNGLTEDQFENQKLANEELDTQLTVTKAELNGMFQKFSSLEVELDDKSNCCEELEATCLELQLQLESMAKKETPKNIMNQKEEKSETGWEITSASAKLAECQETIISLGKQLKALASPRREKVVKYEPFSTSTADVKIMNKRTSLRDKMLAEDENKLLVLSSPKVEEETITGESNKLLSKNDEADSIGSKQKAGAVAIVPSKKQGGFSLLRKLLLRRKKSSGKKSGR 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9923097 9926357 + Conep08aG0115300.1 Cone8ag1122 443671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1122 737 Pfam Filament-like plant protein, long coiled-coil 467 632 IPR008587 -
Cone8ag1122 737 Pfam Filament-like plant protein, long coiled-coil 69 335 IPR008587 -
Cone8ag1122 737 Pfam Filament-like plant protein, long coiled-coil 339 460 IPR008587 -
Cone8ag1122 737 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 730 - -
Cone8ag1122 737 MobiDBLite consensus disorder prediction 680 697 - -
Cone8ag1122 737 Coils Coil 463 511 - -
Cone8ag1122 737 Coils Coil 561 581 - -
Cone8ag1122 737 Coils Coil 141 168 - -
Cone8ag1122 737 MobiDBLite consensus disorder prediction 680 705 - -
Cone8ag1122 737 Coils Coil 307 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1122 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1122 Cone-Chr8:9923097 Cone9ag1331 Cone-Chr9:9988723 1.46E-61 dispersed
Cone12ag1074 Cone-Chr12:8839303 Cone8ag1122 Cone-Chr8:9923097 0 wgd
Cone12ag0138 Cone-Chr12:710707 Cone8ag1122 Cone-Chr8:9923097 9.14E-98 wgd
Cone6ag1404 Cone-Chr6:11282662 Cone8ag1122 Cone-Chr8:9923097 3.01E-55 wgd
Cone8ag0137 Cone-Chr8:715855 Cone8ag1122 Cone-Chr8:9923097 3.75E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2