Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1127 ATGCGTGGGAGTTTAGAACCGTTGGATTTGGGAGTACAGATTCCATACCTTTTCAGGTGTCCGATCTCTCTCGAGCTCATGCGTGATCCTGTAACCGTCAGCACCGGTCAGACCTACGACCGCTCCAGCATCGAGTCCTGGGTTGCCACCGGTAATACCACCTGCCCGGTCACTCGCCTTCCCCTCACTGATTTCTCTCTCATCCCTAACCACACCCTCCGCCGGTTAATCCAGGAGTGGTGCGTCGCTAACCGCTCTTTGGGTATCGAGCGTATTCCGACTCCGAAACAGCCGGCTGACCCCGCCTTGATTCGTTCTTTATTGCACCAAGTCTCATCCGAGTCGTATCCGGTTCATTCACGTCTCGTTGCTCTGCGTCGACTCAGAGGACTCGCTCGTGACTCAGACAAGAATCGTTCTCTGATTACCTCGCACAACGCGAGGGAGGTGCTGATTGACGTCGTCTTCTCCAATTCAGAATTCGATCCATCCGAGTTGAGTCACGAGTCGCTCGCACTTCTGGTAATGTTCCAGCTCACTGAGTCGGAGTGTGCTTCCGTGGCATCAGATCCTCGCAGAATTAGCTATCTTTCAGATCTGCTATACCATTCTTCGATAGAAGTACGAGTAAACTCCGCCGCGCTGATTGAAATTGTCGTCTCCGGAACTCGGTCTCCGGAGCTCCGAGTCGAAATCAACAATGTCGACGAAATATTCGAAGGAGTCATCGAGATTCTGAGAAATCATCCTATTGGTTATACGCGCGCTCTCAAGGTTGGAATCAAGGCGTTGTTCGCACTGTGCCTCGTGAAACAGAGCAGGCACAAAGCCGTTGCAGCCGGAGCGGCGGAGACTCTCATCGGTCGACTGGCCAGTTTTGATAAATGTGACTCAGAGCGAGCTCTGGCGACGATTGAGCTGCTCTGCCGGATTCCAGAAGGATGCGCCGCGTTTTCAGGTCACGCACTCACCGTCCCTCTGCTGGTGAGAGTAATTCTGAAGATATCTGAGCGTGCAACAGAGTACGCCGCGGGAGCTCTTCTTTCGCTCTGCTCCTCGTCGGAGCAGAGCCAAAGAGATGCAGTTGCGGCGGGGATACTGAACCAGTTACTTTTGCTGGTGCAAAGCGATCGTACAGATCGAGCTAAGCGGAAGGCTCAGATGTTACTGAAGCTTCTTCGTGATTCATGGCCTGGAGATTCGATCCAAAACTCTGATGATTTTGCTTGCAGTGACGTCGTTGTACCGTTTTGA 1254 52.79 MRGSLEPLDLGVQIPYLFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRLPLTDFSLIPNHTLRRLIQEWCVANRSLGIERIPTPKQPADPALIRSLLHQVSSESYPVHSRLVALRRLRGLARDSDKNRSLITSHNAREVLIDVVFSNSEFDPSELSHESLALLVMFQLTESECASVASDPRRISYLSDLLYHSSIEVRVNSAALIEIVVSGTRSPELRVEINNVDEIFEGVIEILRNHPIGYTRALKVGIKALFALCLVKQSRHKAVAAGAAETLIGRLASFDKCDSERALATIELLCRIPEGCAAFSGHALTVPLLVRVILKISERATEYAAGALLSLCSSSEQSQRDAVAAGILNQLLLLVQSDRTDRAKRKAQMLLKLLRDSWPGDSIQNSDDFACSDVVVPF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9943296 9944906 - Conep08aG0115800.1 Cone8ag1127 443676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1127 417 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Cone8ag1127 417 SMART Ubox_2 17 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1127 417 PANTHER WDSAM1 PROTEIN 11 399 IPR045185 GO:0061630(InterPro)
Cone8ag1127 417 CDD RING-Ubox_PUB 15 67 IPR045210 -
Cone8ag1127 417 Pfam U-box domain 14 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1127 417 Gene3D - 254 393 IPR011989 -
Cone8ag1127 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 90 IPR013083 -
Cone8ag1127 417 Gene3D - 95 250 IPR011989 -
Cone8ag1127 417 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1127 417 SUPERFAMILY ARM repeat 103 393 IPR016024 -
Cone8ag1127 417 SUPERFAMILY RING/U-box 12 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0019 Cone-Chr12:170439 Cone8ag1127 Cone-Chr8:9943296 6.39E-63 dispersed
Cone17ag1116 Cone-Chr17:8285695 Cone8ag1127 Cone-Chr8:9943296 1.91E-15 dispersed
Cone3ag1183 Cone-Chr3:30496195 Cone8ag1127 Cone-Chr8:9943296 5.05E-228 dispersed
Cone4ag1625 Cone-Chr4:12321853 Cone8ag1127 Cone-Chr8:9943296 7.14E-33 dispersed
Cone5ag1317 Cone-Chr5:7662685 Cone8ag1127 Cone-Chr8:9943296 3.67E-54 dispersed
Cone5ag1750 Cone-Chr5:12453767 Cone8ag1127 Cone-Chr8:9943296 1.48E-32 dispersed
Cone6ag1272 Cone-Chr6:10165236 Cone8ag1127 Cone-Chr8:9943296 2.55E-39 dispersed
Cone7ag0450 Cone-Chr7:2038046 Cone8ag1127 Cone-Chr8:9943296 1.73E-35 dispersed
Cone7ag0984 Cone-Chr7:7594941 Cone8ag1127 Cone-Chr8:9943296 1.10E-24 dispersed
Cone8ag0034 Cone-Chr8:211847 Cone8ag1127 Cone-Chr8:9943296 4.50E-24 dispersed
Cone8ag1127 Cone-Chr8:9943296 Cone9ag1248 Cone-Chr9:9156608 7.94E-32 dispersed
Cone10ag0996 Cone-Chr10:6791780 Cone8ag1127 Cone-Chr8:9943296 3.06E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1127 - - - 0.0