Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1131 ATGCTTAGAGGATTGAGCAGAATGAAATCGAACGCTGTTCATCTTCTGCAGAAGAAGAGTTTCTCCCAAGGAGTCCTTTACGATGGATTTGATTGGAGCTCCGACTTCTTCATCACTAACTCTAGGGCCGTGGAAGGATTACTCTCCGATCTTCGTTCCTATGTCCACAAGGTTCTAGCCGCGAGGAGGAGCAGAAGCCGCGAGGAGAAATCGAAGCAGGAACAAACTCCTTCCTTCTTGAACGGTTCGATCGCTTACTGGACCCCGGCTCTTCCTTTCTCGAGCTCTCTCAGTGGAGGTGCTTTTCTTCCTAAGCAAGCTGAGGTATTCCTTGATAAGGATAATTTCGGAAGAATTTTCTATAACCAAGCTATAATGTCTTCTCGAGGGATTCCCCAAATTGCCCTTGTGTTGGGTTCTTGCACGGCTGGAGGTGCTTGTATACCAGCCATGGCTGATGAGAGTGTTATGGTTAAAGGAAATGACATCATTTTTCTAGTTGGTCCCCGTCTTGTGAAGGTGTTAATTTCATATGAATTGCATGGACTTGCACTGGGAAGGAACATTTTTAAGAACTTGCACATGGCTGGGAAAGAAGGGTTGATAAATGGATTGGAAAATGTAAGGCTTGAATTTAAAGAGCAATTGTACGATGCGAAAGAGCTTCGATCCATTGCACCAGTGGACCATAAGCAGTCGTTTGATATTCGGTCAGTCATTGCTCGGATTGTTGATGGGAGTGAATTTGATGAATTCAAGAAATTGTTGGCTCCGAGATCTGAGGCAAATGGGATTGCAAAATCCAGGGCGAAAATGGTCTGGGCATTTCTTGCTCCAAGGTCAATATCGATATCTCTTGCCAGAGTGCCGAAAGTAACTGTCATTGTTGGAGGAAGCGTTGGTGCTGGAAATTATGAGCCATGTGTGGCAGCTGGTGTACTGACTCAAATAGAAAGGATCAACAAGAAGAAGCAAGGAATTGAGGTAAATGGTGTTCTTTTTTTGACATTTAATGAATTCGAAGTAAATGGTGGTGTAGTTTTAGGCATTGTAGAGCAAGGAGGAGGAGGAGAGGTTCAAGGCAAAGATCGTAGGAGGAGGAGAGGGAGGGGAGCTCTTACTATACTGCTAGGCTTTGGGATGATGGAGTCATTGACCCATGATACGAGAAAAGTGATCGGATTATGTCTCTCTGCTTCGATGGACCGGACAAGTGAAGCGACCAAGTATGGTGTGTTTAGGATGTAA 1248 44.79 MLRGLSRMKSNAVHLLQKKSFSQGVLYDGFDWSSDFFITNSRAVEGLLSDLRSYVHKVLAARRSRSREEKSKQEQTPSFLNGSIAYWTPALPFSSSLSGGAFLPKQAEVFLDKDNFGRIFYNQAIMSSRGIPQIALVLGSCTAGGACIPAMADESVMVKGNDIIFLVGPRLVKVLISYELHGLALGRNIFKNLHMAGKEGLINGLENVRLEFKEQLYDAKELRSIAPVDHKQSFDIRSVIARIVDGSEFDEFKKLLAPRSEANGIAKSRAKMVWAFLAPRSISISLARVPKVTVIVGGSVGAGNYEPCVAAGVLTQIERINKKKQGIEVNGVLFLTFNEFEVNGGVVLGIVEQGGGGEVQGKDRRRRRGRGALTILLGFGMMESLTHDTRKVIGLCLSASMDRTSEATKYGVFRM 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9961792 9964150 + Conep08aG0116200.1 Cone8ag1131 443680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1131 415 Gene3D - 258 415 - -
Cone8ag1131 415 SUPERFAMILY ClpP/crotonase 98 176 IPR029045 -
Cone8ag1131 415 Pfam Carboxyl transferase domain 178 258 IPR034733 -
Cone8ag1131 415 Pfam Carboxyl transferase domain 95 176 IPR034733 -
Cone8ag1131 415 PANTHER ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED 178 255 IPR045190 GO:0004485(PANTHER)|GO:0005739(PANTHER)|GO:0006552(PANTHER)|GO:1905202(PANTHER)
Cone8ag1131 415 Gene3D - 92 195 - -
Cone8ag1131 415 SUPERFAMILY ClpP/crotonase 177 310 IPR029045 -
Cone8ag1131 415 Gene3D - 208 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1131 K01969 - - csv:101204438 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1089 Cone-Chr12:8906284 Cone8ag1131 Cone-Chr8:9961792 3.97E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g401 . . . . . . . . . . . . . . . . . Bhi05g01068 . . . . . . . . . . . . . . Cone8ag1131 . . . Csa07g00754 . . . . . . . . . Bma08g00800 . . . . . Car11g01094 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009509 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33