Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1153 ATGGCGCATGCTCTACCTGATGGTGAGGCCGATGAGAAAATGCAAGAGAAATCGGAATTAACAATGGAGGCGAATGAATCGAATAATAGCAATTGCAATAATATTCATACTAGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAGTACCATCAATAACAATAAGAACAAGAACAGTAGTATTAGTAATTTTAATGCGTTCAGGTTCAATGCTCAAGCGCCTGAATTTGTTCCAAGATCGCATGCGCAGAATTATATGTCGATCTCGGGTTACTTGTATCCGTGGTTTCATTTTCTTGGCGGGTCCGGTTCAGATTGGTTCTATCTTGGAGAACAAGAACATGCTACTTATTTGATCCCTAACAATCCTACCCCTTTCCCCAATTCATCCAAGAATATCCTGACTGATGATCTTCGCCAAAAGATTATTAAACAGGCAGAGTACCAGTTTAGTGACATGAGTTTGCTTGTTAATGAACATCTGACAAAACACATTAATAAAGACCCTGATGGCTATGTTCCGATATCTGTCATTGCTACAACCAAAAAAATCAAGTCACTTTTAAGCAACCACCTGTTAGTCGCCCAAGTACTAAGGTCCTCTTCAAAGCTTGTTGTAAGTGAAGACGGGAGGAGGGTTAAACGTAAGCACCCGTTCACTGATAAAGAGAAAGAGGAATTGCAATCTCGTACCGTAGCTGTTGAAAACTTGCCTGAAGATCACTCTCATCAAAATCTAGAGAATATATTTAGTGCTGTTGGAAGTGTGAAAACCGTTTGGATATGCAATCCTCAGGAGTCCATTTCTCCCTGCTCTAAGCCTGAACTTTTTATCAGTAACAAGCTCCATGCACTTGTGGAGTATGGGTCGCAAGAGGTAGCTGAGAGAGCGGTTGAGAAGTTCAATGATGAAAGGAATTGGAGAAAGGGGCTCCGGGTAAGATTGCTCCTCAGATGCTCGCCAAAATCTGTGTTGAAATGCAGAAAGTCAGAGTTTGATGGCATTTTCGACAACGGGGATTCCCCAACAGCCCTTGAATCCAATGAGGACTCCTCTTCTCTGACTCACAAAACAGACATGGCTTCTGATATTACTGCTAAAGAAAACGCTACGGGATCAAAGAAACAGTGGAGCAGAGGACATGGGAAAGGAAGAGGACGATCTGAAAACCATAATGGACATGGCTTACTTTCTTCTCCTTCTCCCCAAACAAGCAGCAGCACATCAATTCAATTTGAATCATCTTCCAAACATAGCTCTAAGGGCCCAAGAATGCCAGATGGGACTAGAGGATTCACCATCGGTAGAGAAAAACAGCTCTGCAAATTTGAATAA 1332 42.19 MAHALPDGEADEKMQEKSELTMEANESNNSNCNNIHTSSSSSSSSSSSTINNNKNKNSSISNFNAFRFNAQAPEFVPRSHAQNYMSISGYLYPWFHFLGGSGSDWFYLGEQEHATYLIPNNPTPFPNSSKNILTDDLRQKIIKQAEYQFSDMSLLVNEHLTKHINKDPDGYVPISVIATTKKIKSLLSNHLLVAQVLRSSSKLVVSEDGRRVKRKHPFTDKEKEELQSRTVAVENLPEDHSHQNLENIFSAVGSVKTVWICNPQESISPCSKPELFISNKLHALVEYGSQEVAERAVEKFNDERNWRKGLRVRLLLRCSPKSVLKCRKSEFDGIFDNGDSPTALESNEDSSSLTHKTDMASDITAKENATGSKKQWSRGHGKGRGRSENHNGHGLLSSPSPQTSSSTSIQFESSSKHSSKGPRMPDGTRGFTIGREKQLCKFE 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10043296 10046000 - Conep08aG0118500.1 Cone8ag1153 443702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1153 443 PRINTS Lupus La protein signature 144 161 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone8ag1153 443 PRINTS Lupus La protein signature 170 185 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone8ag1153 443 PRINTS Lupus La protein signature 223 239 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone8ag1153 443 PRINTS Lupus La protein signature 201 214 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cone8ag1153 443 MobiDBLite consensus disorder prediction 1 53 - -
Cone8ag1153 443 MobiDBLite consensus disorder prediction 21 53 - -
Cone8ag1153 443 MobiDBLite consensus disorder prediction 391 421 - -
Cone8ag1153 443 Gene3D - 219 321 IPR012677 -
Cone8ag1153 443 PANTHER LUPUS LA PROTEIN-RELATED 27 434 IPR045180 GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005844(PANTHER)
Cone8ag1153 443 SUPERFAMILY Winged helix DNA-binding domain 133 218 IPR036390 -
Cone8ag1153 443 CDD RRM_La_like_plant 229 316 IPR034878 GO:0003723(InterPro)
Cone8ag1153 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 317 IPR000504 GO:0003723(InterPro)
Cone8ag1153 443 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag1153 443 ProSiteProfiles La-type HTH domain profile. 131 222 IPR006630 -
Cone8ag1153 443 MobiDBLite consensus disorder prediction 337 443 - -
Cone8ag1153 443 Gene3D - 128 218 IPR036388 -
Cone8ag1153 443 SMART la 135 215 IPR006630 -
Cone8ag1153 443 Pfam La domain 141 198 IPR006630 -
Cone8ag1153 443 MobiDBLite consensus disorder prediction 340 375 - -
Cone8ag1153 443 Pfam RNA recognition motif 232 302 IPR000504 GO:0003723(InterPro)
Cone8ag1153 443 SUPERFAMILY RNA-binding domain, RBD 224 316 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1153 K15191 - - rcu:8283270 473.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0936 Cone-Chr8:8987742 Cone8ag1153 Cone-Chr8:10043296 8.92E-68 dispersed
Cone8ag1153 Cone-Chr8:10043296 Cone9ag0899 Cone-Chr9:4407228 2.24E-47 dispersed
Cone12ag1111 Cone-Chr12:8997215 Cone8ag1153 Cone-Chr8:10043296 6.63E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35