Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1156 ATGGATCGGTCGGCGATCACTATGGGCCCCGGCATGGACATGCCAATCATGCCCGACAGCGATCGTTACGAGCTGGTTCGAGATATTGGATCTGGAAATTTTGGTGTAGCGAGGTTGATGAGGGATAAGAAAACTGAAGAGCTCGTTGCTGTCAAGTACATCGAGCGAGGTGACAAGATAGATGAAAACGTCCAGAGGGAGATCATAAACCACAGATCTTTGAGGCATCCTAACATTGTCAGATTCAAAGAGGTGATATTAACACCAACACATCTGGCTATCGTGATGGAATATGCATCTGGAGGAGAGCTCTTCGAGCGTATATGCAATGCTGGGCGATTCAGTGAGGATGAGGCACGTTTCTTCTTCCAGCAACTTATATCAGGTGTCAGCTACTGTCATGCAATGCAAGTATGTCATAGAGACTTAAAATTGGAAAATACATTGTTGGATGGAAGTCCTGCTCCTCGCTTGAAGATCTGTGATTTTGGTTACTCCAAGTCCTCCGTTCTGCATTCACAACCGAAATCAACTGTTGGCACTCCAGCTTATATTGCTCCTGAAGTTTTACTTAAGAAGGAGTATGATGGCAAGATTGCTGATGTATGGTCCTGTGGAGTGACTTTGTATGTCATGTTGGTTGGTGCATACCCTTTTGAAGATCCTGAGGACCCTAAAAACTTCCGCAATACAATCATGAGGATTTTGAATGTTCAATACACAATCCCTGACTATGTCCATATATCTCCTGAGTGTCAACATCTCATCTCGAGGATATTTGTTGCTGAACCGGCAAAGAGGATAAATATTCCAGAAATTAAGAATCACGAATGGTTTCTAAAGAACCTTCCGGCAGATCTGATGGATGAAAACAGTATGCAGCAGTTTGAAGAGCCGGATCAACCAATGCAAAGCGACGAGGAAATCATGCAGATCATAACTGAGGCAACCGTTCCGGCTGCTGGGACCCAGAGTCTCAACCAATATCTTACGGGCAGTCTGGATATTGATGATGACATGGACGAGGATCTTGAGACGGACCCTGATCTTGATATCGATAGCAGCGGTGAGATAGTTTACGCCATGTAA 1089 44.63 MDRSAITMGPGMDMPIMPDSDRYELVRDIGSGNFGVARLMRDKKTEELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRNTIMRILNVQYTIPDYVHISPECQHLISRIFVAEPAKRINIPEIKNHEWFLKNLPADLMDENSMQQFEEPDQPMQSDEEIMQIITEATVPAAGTQSLNQYLTGSLDIDDDMDEDLETDPDLDIDSSGEIVYAM 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10056188 10059383 + Conep08aG0118800.1 Cone8ag1156 443705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1156 362 SMART serkin_6 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1156 362 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Cone8ag1156 362 CDD STKc_SnRK2 22 278 - -
Cone8ag1156 362 FunFam Serine/threonine-protein kinase SRK2E 13 98 - -
Cone8ag1156 362 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Cone8ag1156 362 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1156 362 SUPERFAMILY Protein kinase-like (PK-like) 18 313 IPR011009 -
Cone8ag1156 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1156 362 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1156 362 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Cone8ag1156 362 PANTHER SERINE/THREONINE KINASE 25 300 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone8ag1156 362 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1156 K14498 - - gmx:100804702 652.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1195 Cone-Chr6:9238482 Cone8ag1156 Cone-Chr8:10056188 2.19E-174 dispersed
Cone8ag1156 Cone-Chr8:10056188 Cone9ag0635 Cone-Chr9:3021999 9.89E-175 dispersed
Cone12ag1115 Cone-Chr12:9013490 Cone8ag1156 Cone-Chr8:10056188 3.81E-251 wgd
Cone12ag0105 Cone-Chr12:551353 Cone8ag1156 Cone-Chr8:10056188 9.14E-194 wgd
Cone8ag0108 Cone-Chr8:558007 Cone8ag1156 Cone-Chr8:10056188 8.39E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83130 None None None None Cone PK