Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1166 ATGCCGCGTCCTCATTTCTACAAACTCATTCTTTCGTCCACTCTCCGAGCCAAGCAATTGAGAATTCCAGAAAATTTTCTCAGGAAAATCAGGGATGAGCTCTCTACAGTTGCTACATTTTTAGTTCCTGATGGTCATGTTTGGCGTATAGGATTGAAGAAAGCTGATAACAAGTTTTGGCTTCAAGATGGTTGGCAGGAATTTATTGAGCATTACTCCATCCGTGTGGGGTATTTCTTACTGTTCAGATACGAAGGGAAATCAAATTTCAATGTTTACATTTATAACTTGAAAACATCTGAAATGGACTATCAATCTACTACTCTCGGCGGGACTCAAAGGACCACCTATGCAAATCAAAGTGCTACATTCGAAGAATTAGAAGATGAGGACTCGGCTTCCGACACTTTAAAAGATGGGGTTTTTCAAGAAGTTGTAGATAATCAGAAGTCCTCCAAAATTTCTATTCCTCTTTCACAAAGTTTATTCAATGGGTCTTCTACAAACAAGACGAGCATGAATTGGACTAATGAAGGGAGCCCTCATTTACCAAAGCATGATGATAATTCACAAACTGAACTTCAGCCTAAAAGAAGGGGTAGAAAAAAGCGGAAAACAGATTCTAATGAGCAGGGTCCATCCACTAAAAAAGAAGGGCAACTAACAATGCGCATTAGATTTTACGAAAGTGCTTCTATCAGGAAGAGACCAGTGACCACAGAAGAAAGAGATAGTGCCATTAATTCAGCCAAAGCCCTTAATCCCATTAATCCTTTCTGCAGGGTTGTATTACGACCTTCCTATCTATATAAAGGTTGTATAATGTATCTTCCATCCTGCTTTGCCGAGAAGAGTTTATGTGGGGTTTCTGGATTCATCAAGCTTCAGATTCCGGACGGAAGACAGTGGCCTGTTAGATGCTTGTATAGAGGAGGTAGAGCTAAGCTGAGCCAGGGATGGTATGAATTTTCATCAGAGAATAATTTGGAAGAAGGAGATGTTTGTGTCTTTGAGTTGATCAAGGGAAAAGAAATTGTTCTAAAAGTGACCATTTTCCGGGTTGTTGAAGATGTTAAACTCATGACTCCACCACCTACAACGTGGCAGAAAAGCTTAAGCAAAGAAACAATGGCGTCCGCTTCAGCTAGTCTCTCTCCAGCCATGTCTACTGCTTCCACGTTTTCGTCAAGGAGACAGATGAACAGAGTGCATTACATAACAGACCTGAATTCGTTTGGTGGGCTTAAGGCCCACAACCATGTGCTCTTCTTAGGCGTTCCTTCATGCCCTGAGCAGTCATTTGCAAAAGTTGTAAGCTCCTTGAAATTCCCATCAAAAGGCAGAGGAGGAGGAGGTGCTCTCTCTTCTACCTGTAATGCAGTGGGTGAAATATTCAGGATTGCTGCTATAATCAATGGCCTGGTTCTTGTCGGAGTAGCTGTTGGATTTGTTCTTCTCCGAATCGAAGCATTTGTGGAAGAATCTGAATCTGATTTTTCCTAG 1503 41.45 MPRPHFYKLILSSTLRAKQLRIPENFLRKIRDELSTVATFLVPDGHVWRIGLKKADNKFWLQDGWQEFIEHYSIRVGYFLLFRYEGKSNFNVYIYNLKTSEMDYQSTTLGGTQRTTYANQSATFEELEDEDSASDTLKDGVFQEVVDNQKSSKISIPLSQSLFNGSSTNKTSMNWTNEGSPHLPKHDDNSQTELQPKRRGRKKRKTDSNEQGPSTKKEGQLTMRIRFYESASIRKRPVTTEERDSAINSAKALNPINPFCRVVLRPSYLYKGCIMYLPSCFAEKSLCGVSGFIKLQIPDGRQWPVRCLYRGGRAKLSQGWYEFSSENNLEEGDVCVFELIKGKEIVLKVTIFRVVEDVKLMTPPPTTWQKSLSKETMASASASLSPAMSTASTFSSRRQMNRVHYITDLNSFGGLKAHNHVLFLGVPSCPEQSFAKVVSSLKFPSKGRGGGGALSSTCNAVGEIFRIAAIINGLVLVGVAVGFVLLRIEAFVEESESDFS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10086216 10089634 + Conep08aG0119800.1 Cone8ag1166 443715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1166 500 MobiDBLite consensus disorder prediction 160 179 - -
Cone8ag1166 500 SUPERFAMILY DNA-binding pseudobarrel domain 254 353 IPR015300 -
Cone8ag1166 500 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 Pfam PetM family of cytochrome b6f complex subunit 7 462 489 IPR012595 GO:0009512(InterPro)
Cone8ag1166 500 SUPERFAMILY PetM subunit of the cytochrome b6f complex 461 493 - -
Cone8ag1166 500 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Cone8ag1166 500 CDD B3_DNA 258 353 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 SMART B3_2 260 355 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 Hamap Cytochrome b6-f complex subunit 7 [petM]. 460 493 IPR012595 GO:0009512(InterPro)
Cone8ag1166 500 PANTHER B3 DOMAIN-CONTAINING 3 343 IPR050655 -
Cone8ag1166 500 Pfam B3 DNA binding domain 10 95 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 Pfam B3 DNA binding domain 262 354 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 ProSiteProfiles B3 DNA-binding domain profile. 260 355 IPR003340 GO:0003677(InterPro)
Cone8ag1166 500 MobiDBLite consensus disorder prediction 160 221 - -
Cone8ag1166 500 Gene3D - 237 358 IPR015300 -
Cone8ag1166 500 Gene3D - 1 98 IPR015300 -
Cone8ag1166 500 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1132 Cone-Chr10:8148394 Cone8ag1166 Cone-Chr8:10086216 9.57E-37 dispersed
Cone12ag1122 Cone-Chr12:9053914 Cone8ag1166 Cone-Chr8:10086216 2.15E-61 dispersed
Cone3ag1122 Cone-Chr3:29806884 Cone8ag1166 Cone-Chr8:10086216 1.61E-60 dispersed
Cone3ag1123 Cone-Chr3:29810506 Cone8ag1166 Cone-Chr8:10086216 9.15E-19 dispersed
Cone10ag1130 Cone-Chr10:8141996 Cone8ag1166 Cone-Chr8:10086216 2.48E-132 wgd
Cone12ag1121 Cone-Chr12:9050836 Cone8ag1166 Cone-Chr8:10086216 5.46E-249 wgd
Cone3ag1121 Cone-Chr3:29791630 Cone8ag1166 Cone-Chr8:10086216 7.40E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46705 PF03169 OPT 2.30E-133 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1166 - - - 0.0