Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag1170 | ATGTCTTCTTCTTCCTCTTCCGAACTACCTTTAAAGGCCATTCCCGGCTATTATGGCCTTCCTTTCTTCAGCCCAATCAAAGACCGTCTCGACTACTTTTACAACCAAGGCGAGGATGAGTTCTTCCGCTCACGAATCCGCCACTACAGCTCCACCGTCTTCCGAACCAACATGCCGCCAGGTCCGTTCATTTCCTCCAACCCAAGAGTCATCGCAGTCCTCGACGCCGTTAGCTTCGCTGTTCTCTTCGACAACTCCAAGATCGAGAAACGTGACGTCCTTGACGGAACTTTCATGCCGTCGACTTCCTTCACCGGAAACTACCGCGCCTGTGCATATCTAGACCCTTCCGAACCAGATCACAAAGCTCTCAAAAGCTTCTTCCTCTATCTCCTCGCCACTAACCATCACACTTTCCTCCCTCTCTTCCGCACCTCCTTATCCGAGCTCTTCATCGAGCTCGAAGATCAAGTATCCGATCCCAAACGCAAAGCAAATTTCAACACAATCAGCGACAGTATGGCCTTCTCATTTGTTTTCCGGATCATCTGCGGTCAAAACCCGTCGGACCCAAAGCTCCAATCGGAAGCTCCGAAAATGATCGACAAATGGCTCATATGCCAGCTAGCTCCACTCGGAACCCTAGGCTTACCAAAGATACTCAAAATCCTAGACGACTTGTTGTTGCGCACGATCAAATTTCCATTCCTTCTGGTTAAAAACGATTATGAGAAGCTGTACGACATGTTCTACTCGTCGGCGAGCTCCGTTCTGGACGAAGCAGAGAGTAAATTCCAAATCCAGAGAGAAAAGGCATGCCATAACTTAGTCTTTCTCGCAGGTTTTAATGCATATGGGGGGATGAAGATTTTGTTTCCTTCCTTAATCAAGTGGGTTGGATCAGCAGGAGAGACTTTACACCGTCAGCTGGCTGATGAGATCAGGACCGTTGTTAAAGCGGAAGGCGGACTGATCACTATAAGTGCGTTGGATAAGATGACTTTGACAAAATCCGTAGTGTACGAGATTCTAAGAATTGACCCTCCTGTTCCGTACCAGTACGGGAAGGCGAAGGAGGATATCGTGGTCAACAGTCACGACGCGGCGTACAAGATCAAGAAGGGTGAGATGATCTTTGGATATCAGCCGTTCGCTACGAAGGATCCGAAAGTGTTTGAGAACCCTGAGGAATTTGTTGGCCATAGGTTTGTCGGGGAGGAGGGAGAGAAGTTGTTGAAGTACGTTTATTGGTCGAATGGACGACAGACAGAAGATCCAACGGTAGAGAATAAACAGTGTCCGGGGAAAAATCTGGTGGTGCTTCTATGTAGAGTTATGTTGGTGGAGTTTTTCCTCCGTTACGATACGTTTACGTTCGAGACGAAGACGACGTTTGGATCGGCGGCGGTGACAGTGATCTTCAAGTCGTTGATCAAAGCGAGTACTGTCTGA | 1452 | 48.28 | MSSSSSSELPLKAIPGYYGLPFFSPIKDRLDYFYNQGEDEFFRSRIRHYSSTVFRTNMPPGPFISSNPRVIAVLDAVSFAVLFDNSKIEKRDVLDGTFMPSTSFTGNYRACAYLDPSEPDHKALKSFFLYLLATNHHTFLPLFRTSLSELFIELEDQVSDPKRKANFNTISDSMAFSFVFRIICGQNPSDPKLQSEAPKMIDKWLICQLAPLGTLGLPKILKILDDLLLRTIKFPFLLVKNDYEKLYDMFYSSASSVLDEAESKFQIQREKACHNLVFLAGFNAYGGMKILFPSLIKWVGSAGETLHRQLADEIRTVVKAEGGLITISALDKMTLTKSVVYEILRIDPPVPYQYGKAKEDIVVNSHDAAYKIKKGEMIFGYQPFATKDPKVFENPEEFVGHRFVGEEGEKLLKYVYWSNGRQTEDPTVENKQCPGKNLVVLLCRVMLVEFFLRYDTFTFETKTTFGSAAVTVIFKSLIKASTV | 483 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 10108017 | 10109468 | + | Conep08aG0120200.1 | Cone8ag1170 | 443719 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag1170 | 483 | CDD | CYP74 | 43 | 455 | - | - | |
| Cone8ag1170 | 483 | PRINTS | E-class P450 group IV signature | 333 | 349 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | PRINTS | E-class P450 group IV signature | 370 | 384 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | PRINTS | E-class P450 group IV signature | 386 | 404 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | PRINTS | E-class P450 group IV signature | 433 | 451 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | SUPERFAMILY | Cytochrome P450 | 10 | 459 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | PANTHER | CYTOCHROME P450 26 | 14 | 454 | - | GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cone8ag1170 | 483 | FunFam | Allene oxide synthase, chloroplastic | 9 | 482 | - | - | |
| Cone8ag1170 | 483 | Pfam | Cytochrome P450 | 306 | 421 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone8ag1170 | 483 | Gene3D | Cytochrome P450 | 9 | 473 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone8ag1170 | Cone-Chr8:10108017 | Cone13ag0179 | Cone-Chr13:1107086 | 8.85E-07 | dispersed | |
| Cone12ag1031 | Cone-Chr12:8642341 | Cone8ag1170 | Cone-Chr8:10108017 | 1.12E-244 | transposed | |
| Cone12ag1126 | Cone-Chr12:9073403 | Cone8ag1170 | Cone-Chr8:10108017 | 0 | wgd | |
| Cone17ag1313 | Cone-Chr17:9317475 | Cone8ag1170 | Cone-Chr8:10108017 | 5.25E-194 | wgd | |
| Cone20ag0160 | Cone-Chr20:698999 | Cone8ag1170 | Cone-Chr8:10108017 | 8.30E-194 | wgd | |
| Cone4ag1880 | Cone-Chr4:13437908 | Cone8ag1170 | Cone-Chr8:10108017 | 8.98E-194 | wgd | |
| Cone7ag1789 | Cone-Chr7:11734720 | Cone8ag1170 | Cone-Chr8:10108017 | 2.24E-189 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag1170 | K01723 | - | vvi:100253713 | 656.366 |