Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1176 ATGGAGGGTCTGTGTTGTATCTCTCTGCATTCGCCATCTCTAACTGCATTACCTTGTTTCTCCTCTCTATATCGATCCCGATTAGTCGAAAAACCATTCCTTTACGGTCAATTCTTCATAAAATCCAACAATATCAAGGCGTACCCAATTCCCAGAAATCTCGAGCTCATTCATGTCAGAGCTCAAGCTTCGAGCACAAAGGAAATCAGGTCAGAGGCAGGATCTGAGAAATTCTCAAAAGATGACAATCTTGCATTTGTGGCTGGTGCTACTGGAAAAGTTGGATCAAGAACAGTCAGGGAGCTTCTAAAACTCGGCTTCAAGGTCAGAGCCGGAATAAGAAGTGCTCAGAAAGCCGAAACTCTTGTTCAAAGTGTAAAGCAATTGAAGCTAAATGAAAGTGAAGCAAGTGGACCTTTGGAAAGGCTTGAAATTGTAGAATGTGACTTGGAGAAACCGAATCAGATCGCGCCTGCTTTGGCAAACTCATCTGTAGTTATTTGCTGTATTGGTGCGAGTGAGAAGGAGGTTTTCGACGTCACTGGACCTTATCGGATCGACTATCGGGCTACCAAAAACTTGATTGATTCAGCAACTGCTGCAAAAGTGAAGCACTTTATTCTGTTAACATCTTTGGGAACAAATAAGGTTGGGTTTCCAGCAGCAATTCTCAATTTGTTTTGGGGAGTACTTATCTGGAAAAGGAAGGCAGAAGAAGCATTGTTAGCCAGTGGGCTTCCTTACACTATAGTGAGACCGGGAGGAATGGAGCGGCCTACTGATTCTTACAAGGAAACTCATAACATCACTCTCTCGCCTGAAGATACTTTATTTGGTGGTCAAGTGTCAAATCTTCAGGTAGCAGAGGTCATTGCATTCACAGCCAAAAATCTGAGTCTTTCATGCTGTAAAGTAGTGGAAGTAATTGCAGAGACCACTGCACCTCTAACTCCTTTCGATAAACTTCTTGCAAAGATACCTTCACAACGTACCTGTGATTTCTCAGTCAAGGAATCAGATGTCTCAGTTGTGTTCGATTCAAAACCTACTGAGACGGAACCTGTAGAACAAAAGGCGAAAAAAAGTCCGCTCTCACCTTATATCGTGTATGAGGACTTAAAACCACCTACATCTCCAACCCCAACTCCACCTATCAACCAGAAACCAAAAGACTTAGCTGCTCAAGCCGATATCACTGAGGCAGAACCAGTTCCCGAAAAGGAGCTAGTAATAGTAACAAAGCCTCTTTCGCCTTTTACTGCATATGATGACTTGAAGCCCCCTACCTTACCATCTCCCAGTGCACCAAACACTCAAAATAACTCTTTGGCCCCTGCTCCGGAAGGTGGGCCGCCTCTCCAGGAACGTCCCACCTTGGTCAACAGCAACGGACCTAGTCCACCTGAAGATAAACCAGTCGAGATTGAACATCGACATAGCGGGACCAAGACAAGGCCCTTGTCACCTTTTCCAATGTACGAGGACTTGAAGCCTCCGGCATCTCCAGTCCCGAGTCCGAGAAAATCCTAA 1530 44.84 MEGLCCISLHSPSLTALPCFSSLYRSRLVEKPFLYGQFFIKSNNIKAYPIPRNLELIHVRAQASSTKEIRSEAGSEKFSKDDNLAFVAGATGKVGSRTVRELLKLGFKVRAGIRSAQKAETLVQSVKQLKLNESEASGPLERLEIVECDLEKPNQIAPALANSSVVICCIGASEKEVFDVTGPYRIDYRATKNLIDSATAAKVKHFILLTSLGTNKVGFPAAILNLFWGVLIWKRKAEEALLASGLPYTIVRPGGMERPTDSYKETHNITLSPEDTLFGGQVSNLQVAEVIAFTAKNLSLSCCKVVEVIAETTAPLTPFDKLLAKIPSQRTCDFSVKESDVSVVFDSKPTETEPVEQKAKKSPLSPYIVYEDLKPPTSPTPTPPINQKPKDLAAQADITEAEPVPEKELVIVTKPLSPFTAYDDLKPPTLPSPSAPNTQNNSLAPAPEGGPPLQERPTLVNSNGPSPPEDKPVEIEHRHSGTKTRPLSPFPMYEDLKPPASPVPSPRKS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10129681 10132935 - Conep08aG0120900.1 Cone8ag1176 443725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1176 509 FunFam Protein TIC 62, chloroplastic 81 329 - -
Cone8ag1176 509 Gene3D - 83 329 - -
Cone8ag1176 509 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 348 508 IPR044719 -
Cone8ag1176 509 CDD SDR_a5 86 292 - -
Cone8ag1176 509 MobiDBLite consensus disorder prediction 492 509 - -
Cone8ag1176 509 Pfam NAD(P)H-binding 89 292 IPR016040 -
Cone8ag1176 509 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 296 IPR036291 -
Cone8ag1176 509 MobiDBLite consensus disorder prediction 420 509 - -
Cone8ag1176 509 MobiDBLite consensus disorder prediction 369 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0316 Cone-Chr10:1505068 Cone8ag1176 Cone-Chr8:10129681 9.33E-12 dispersed
Cone8ag1176 Cone-Chr8:10129681 Cone3ag0349 Cone-Chr3:1768719 2.85E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57