Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1183 ATGATCAAGCTGTTTAAAGTGAAGGAAAAGCAGAGGGAAATTGCAGAGAATGCCAATGGAAAGCCCCCTGTCAAGAAACAAAGTCCAGGAGAATTACGTCTTCAGAAAGATATCAGTGAACTTAATCTACCAAAAAGTTGTAGTATAACATTTCCTAATGGCAAGGATGACTTGATGACTTTTGAGGTCACCGTTAGACCTGATGAAGGATATTATCTAGGTGGTACATTTTTGTTCTCTTTCCAAGTTTCTCCTATCTATCCTCATGAGGCTCCCAAGGTCAAATGCAAGACAAAGGTGTATCATCCAAACATCGACTTGGAAGGGAATGTCTGCCTCAACATCTTAAGAGAAGACTGGAAACCCGTTTTGAATATAAACACAATCATATATGGATTGTTTCATCTTTTCACGCACCCGAACCATGAAGACCCTCTCAACCACGATGCTGCTGCTGTGCTACAGGATAACCCGAAGATGTTTGAATCCAATGTGAGAAGGGCTATGGCTGGTGGTTATATGGGACAGAATTTTTTCCCCCGTTGTATGTGA 552 41.3 MIKLFKVKEKQREIAENANGKPPVKKQSPGELRLQKDISELNLPKSCSITFPNGKDDLMTFEVTVRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTHPNHEDPLNHDAAAVLQDNPKMFESNVRRAMAGGYMGQNFFPRCM 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10154013 10156212 + Conep08aG0121700.1 Cone8ag1183 443732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1183 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Cone8ag1183 183 FunFam NEDD8-conjugating enzyme Ubc12 25 183 - -
Cone8ag1183 183 SUPERFAMILY UBC-like 20 181 IPR016135 -
Cone8ag1183 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 42 159 - GO:0005634(PANTHER)|GO:0019788(PANTHER)|GO:0045116(PANTHER)
Cone8ag1183 183 CDD UBCc 33 167 IPR000608 -
Cone8ag1183 183 SMART ubc_7 32 174 - -
Cone8ag1183 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Cone8ag1183 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Cone8ag1183 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1183 K10579 - - vvi:100255479 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1183 Cone-Chr8:10154013 Cone9ag0830 Cone-Chr9:4054886 7.50E-26 dispersed
Cone10ag1152 Cone-Chr10:8345897 Cone8ag1183 Cone-Chr8:10154013 1.10E-122 wgd
Cone12ag1136 Cone-Chr12:9115460 Cone8ag1183 Cone-Chr8:10154013 2.42E-135 wgd
Cone3ag1141 Cone-Chr3:29987496 Cone8ag1183 Cone-Chr8:10154013 1.56E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76