Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1193 ATGGAGGAGAAGCGCAGGGATGCCGGAACACCACCGTCGGCTGGCATGGAATCGGCATCATCTGAGCCGGCTGCTTCATCGCGCCGTCGAGCTGGAAGCCACAAGCGAAAACTCAGCAGCCTCGGCTTATCGAGTAGCTCCTCCGCGCCTTCAAAACGATCTGCTCGTGAAAAGGCGTTGCTTTCGAACCTTCCGATCCACAACGGCCCGCTCACCAGAGCTCGCCAGGGTCCGAACAACATTTCGGCGGTTCCCTCTGCTGGCTCAGTGCAGACGTCTATCATTTCGGCTCATCCTGAAGCTTCTGCTGGAGATGCAGCTGCAGTTGTAGCTGAGGAATTGAAGAAGGTGGGTAAATTGGAGGCCTTGGAGGCTTCGTTTGAAGCCGAATTCGAAGCTATTAGATCTCGTGGTGCAAATGCCCATATAGTTCCGAGTCATTGTGGTTGGTTTTCTTGGACAGAGATCCACCCAATAGAGGAGCAGAAAATGCCTTATTTTTTCAATGGGAAGTCTGAAACTCGCAATCCTGATATGTACAAGGAGATACGTAATTGGATTGTGAAGAAATTCCATGCAGATCCTAATACACAGATTGAAGTAAAAGATTTATCAGAACTTGAAGTTGGAGATATGGATGCAAGACAGGAGGTGATGGAGTTTTTAGACCACTGGGGTTTAATCAATTTTCACCCATTCCCACCCACTGATTCGACTCCTGACCCTGCCCTTATTGATGATGGGGCAGGAAAGAAAGATTCTTTGGTTGAAAAGTTGTATCATTTTGAAACATTACAGTCCTATCCAACCACCATTGCAAAGACTAATGTAGAAACTCCGGCTATGCCATCTGGTCTTTTTCCAGAATCCACGATATTTGAAGAGTTGGGGAGGCCAGAGGGGCCAGATGTTGAGTACCATTGTAACTCTTGTTCAGCAGATTGTTCTCGGAAACGCTACCATTGCCAGAAGCAGGCTGATTTTGATTTATGTACAGAATGCTTTAGCAATGGAAAATTTGATTCCGATATGTCTTCATCGGATTTTATTCTCATGGAGCCTGCTGAGGCTCCTGGTGTTAGTGGTGGGAAGTGGACAGATCAAGAGACCCTCCTTCTTCTTGAAGCATTAGAGCTTTATAAAGAAAACTGGAATGAGATTGCAGAGCATGTTGCCACAAAAACAAAAGCTCAGTGTATTTTGCACTTTGTTCAAATGCCAATTGAGGACACATTTCTTGACTGTGATGATGATGTTGATGCCAGCTCCAAAGATCCACCTTCAACAGCAAATGATTCATCTGTCCCTCAAGATGCCGCTGAAGCAACAGAGATTAAGAACGAGGCTAAGGAGAGTCAATCTATGATTTCCCCAGTGGAAGCTTCCAATAAAGGAGATAATGTCGAAGGAAAAGCTGGCGAGGAAAATACAAAACTAGAAGAGGTGAGTGCAGTGAAAAATGATGAAGAAAAATCGACAACAGAAGATAATGGTCAAGAGATTCGTGAGGACATTGCACTGAAGGCTTTAACTGAAGCATTTGAAGCCATTGGTTATTCTCCAACACCCGATAATCCACTTTCATTTGCTGAAGTGGGGAACCCTGTCATGGCATTGGCAGCATTCTTTTCACAATTAATAGGACCTGATGTTGCTAGTGCGTCCGCTCATAGCTCTCTAAAAGCCATAAATAGTAATTCCCCTGCTATAGAGCTGGCTACAAGGCATTGCTTCCTGTTGGAAGATCCACCAAATGAAAAGGAGGAAATAACTAATTCAGAGAGTGTTGTTACTGGAAGTTGTGACGGGGATACTCAGAAAGATGAAAAACAAGAGCATGCAAATAAGGAAGAGGACAACGATGAGAAGAAAAATGATTTAGATTCTGCTCCTGATGAAAAGATGGGTGCAATTTCTGAGAAAGGTGATTCTCCAGAGAAATCAACTTCTGAAAAAGTAGAAGATGCCATAACTCATCAGGAAGTGGGACCCGACAATAATGATCCAAGCAATTCAGAATTATCCAAGGATAACGGACCAATTATTCAGGAGGAATCAAGTGATTTAAACTCCAAAGTGGAAATTGCACCAACTTCAGTGGAGAATATTGGGGAGAAAACTTGTGATGGAGAGCCTTCTCAACCAGCAGAAACACCAAAAGATGTTGACATGTCAGACCCTCAGCCGTCAGAGAAAAATGAACCTGAGGAAGCAGTTACATCGAATTGTGAAGAGGTGTCCCATTCAACAGAGGTTTCAAATGATATGTTGGTAAAAGATGAACCTAAAAAGTCAGATGTAGCCAGTTCGGTAGGAGAGTTCTCTCAAATAACTAAAGAACCAAGGGAGATAGACATGGTGTCTGATTCTCAGGTAGAAAAGACTGAGCAATTGCACCCAGATACACCGAAGCCGACCGTGGACAATACTGCTAGTACAGATCCTTCTGCTCCTCTGTCTTCAGGAAAGAATGAGTCTTCTCAACCAGTTGTATCAGACTCAGTCGTTGGAAGTGTAGTGGGTGGGCATCAAAATCAAGAAGGTAAAGAAGCGGATCTTAACTGTAGTGAAAAAAAAGTGAACAAAATTGATAGATTAAAGCGCGCTGCAGTTACTGCACTCGCAGCAGCGACAGTGAAGGCAAAAGTTCTAGCCGATCAAGAAGAACATCAAATCCGGCTACTTTCTATGCTACTAGTTGAAAATCAGCTGCATAAGTTGGAAGCCAAGTTGGCCTTTTTCAACGAAATGGATAATGCAATATTGAGAATGAGGGAACAATTGGACCGAACAAAGCAGAGGCTCTACCAGGAACGAGCACAGATCATAGCGGTCCGGCTTGGTATCCCTGCATCCTCTTCTAGAGGGAAGCCTCAATCATTACCTACTAACAGAATCGCCATGAACTTAGCAGCCAACTCAGTTCCAAGACCTCCAATGAGCATGGCTCCTTCCCAAAGGCCACCACCAATTGCAAGACCTGCGATGGGTCCAGTGGGCCCTGCTACTAACAACTCATTTCCATCCACTGCTGATGGAGGAAGTCAATTTCGCCCCTCTGGTCAGGACAACCTTTCATCGATTGGGACCAAATAA 3096 44.54 MEEKRRDAGTPPSAGMESASSEPAASSRRRAGSHKRKLSSLGLSSSSSAPSKRSAREKALLSNLPIHNGPLTRARQGPNNISAVPSAGSVQTSIISAHPEASAGDAAAVVAEELKKVGKLEALEASFEAEFEAIRSRGANAHIVPSHCGWFSWTEIHPIEEQKMPYFFNGKSETRNPDMYKEIRNWIVKKFHADPNTQIEVKDLSELEVGDMDARQEVMEFLDHWGLINFHPFPPTDSTPDPALIDDGAGKKDSLVEKLYHFETLQSYPTTIAKTNVETPAMPSGLFPESTIFEELGRPEGPDVEYHCNSCSADCSRKRYHCQKQADFDLCTECFSNGKFDSDMSSSDFILMEPAEAPGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDTFLDCDDDVDASSKDPPSTANDSSVPQDAAEATEIKNEAKESQSMISPVEASNKGDNVEGKAGEENTKLEEVSAVKNDEEKSTTEDNGQEIREDIALKALTEAFEAIGYSPTPDNPLSFAEVGNPVMALAAFFSQLIGPDVASASAHSSLKAINSNSPAIELATRHCFLLEDPPNEKEEITNSESVVTGSCDGDTQKDEKQEHANKEEDNDEKKNDLDSAPDEKMGAISEKGDSPEKSTSEKVEDAITHQEVGPDNNDPSNSELSKDNGPIIQEESSDLNSKVEIAPTSVENIGEKTCDGEPSQPAETPKDVDMSDPQPSEKNEPEEAVTSNCEEVSHSTEVSNDMLVKDEPKKSDVASSVGEFSQITKEPREIDMVSDSQVEKTEQLHPDTPKPTVDNTASTDPSAPLSSGKNESSQPVVSDSVVGSVVGGHQNQEGKEADLNCSEKKVNKIDRLKRAAVTALAAATVKAKVLADQEEHQIRLLSMLLVENQLHKLEAKLAFFNEMDNAILRMREQLDRTKQRLYQERAQIIAVRLGIPASSSRGKPQSLPTNRIAMNLAANSVPRPPMSMAPSQRPPPIARPAMGPVGPATNNSFPSTADGGSQFRPSGQDNLSSIGTK 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10187211 10192330 + Conep08aG0122700.1 Cone8ag1193 443742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1193 1031 SUPERFAMILY RING/U-box 305 366 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 778 801 - -
Cone8ag1193 1031 Pfam SWIRM-associated region 1 872 947 IPR032451 -
Cone8ag1193 1031 ProSiteProfiles Myb-like domain profile. 357 407 IPR001005 -
Cone8ag1193 1031 ProSitePatterns Zinc finger ZZ-type signature. 308 334 IPR000433 GO:0008270(InterPro)
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 663 697 - -
Cone8ag1193 1031 Gene3D - 148 233 IPR036388 -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 417 498 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 467 498 - -
Cone8ag1193 1031 CDD ZZ_RSC8 306 350 IPR041984 -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 38 53 - -
Cone8ag1193 1031 ProSiteProfiles SWIRM domain profile. 142 239 IPR007526 GO:0005515(InterPro)
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 981 996 - -
Cone8ag1193 1031 Gene3D - 360 411 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 802 832 - -
Cone8ag1193 1031 Pfam SWIRM domain 152 230 IPR007526 GO:0005515(InterPro)
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 1 85 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 724 741 - -
Cone8ag1193 1031 CDD SANT 381 406 IPR001005 -
Cone8ag1193 1031 SUPERFAMILY Homeodomain-like 149 231 IPR009057 -
Cone8ag1193 1031 ProSiteProfiles SANT domain profile. 360 411 IPR017884 -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 603 661 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 1002 1031 - -
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 424 440 - -
Cone8ag1193 1031 Coils Coil 914 934 - -
Cone8ag1193 1031 SMART zz_5 302 346 IPR000433 GO:0008270(InterPro)
Cone8ag1193 1031 PANTHER SWI/SNF COMPLEX-RELATED 161 964 - -
Cone8ag1193 1031 SUPERFAMILY Homeodomain-like 359 412 IPR009057 -
Cone8ag1193 1031 Gene3D - 299 349 IPR043145 -
Cone8ag1193 1031 SMART sant 361 409 IPR001005 -
Cone8ag1193 1031 FunFam SWI/SNF complex subunit SMARCC2 isoform C 361 411 - -
Cone8ag1193 1031 Pfam Myb-like DNA-binding domain 363 405 IPR001005 -
Cone8ag1193 1031 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 357 399 IPR017930 -
Cone8ag1193 1031 Coils Coil 606 626 - -
Cone8ag1193 1031 Pfam Zinc finger, ZZ type 305 340 IPR000433 GO:0008270(InterPro)
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 972 1031 - -
Cone8ag1193 1031 ProSiteProfiles Zinc finger ZZ-type profile. 303 357 IPR000433 GO:0008270(InterPro)
Cone8ag1193 1031 MobiDBLite consensus disorder prediction 583 832 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1193 K11649 - - mdm:103454251 978.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0826 Cone-Chr17:6618721 Cone8ag1193 Cone-Chr8:10187211 6.58E-51 dispersed
Cone20ag0433 Cone-Chr20:2157113 Cone8ag1193 Cone-Chr8:10187211 1.58E-49 dispersed
Cone1ag0051 Cone-Chr1:272677 Cone8ag1193 Cone-Chr8:10187211 5.83E-16 transposed
Cone12ag1145 Cone-Chr12:9156142 Cone8ag1193 Cone-Chr8:10187211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36