Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1197 ATGTCGATTTCTAGAAACCACTCCGGCGAGGTTCAAGATTATAACGATTCTGTTCCTCAAGATCTCACCTCAAAAACTCCGGTATCCAGCACGAGAATCTACGTACTGATCGGAATCATCGCCGCATTTGTTATCGCAGCTATCTTTCTGATATTTTTCTGCATTCGCACGGGTCGGAGCTCGAGGAAGCGTAAGATTCGCGTGAAGCATAGCTCGGGATCGATTCCACTTTTCTCTAAAGAGATTTTGGAGATCAAAGGTTCGGATCACGCTGAGGATTGTGAGAAAGGGGAGGTCAGAGGTGGAAATGTGAGTCCTCAGAAGGAGAAAAATGAGGTTGAAATGGGGGATGGAGGAGAAAAGAGCAGCGGAGAGAGTGCTGACTTGTCGGTGGAGACGGAGAACATAGGGTGGGGCCGGTGGTATAGCTTGAAAGAGCTAGAAATGGCGACCTGTGGATTCGCCAACGAGAATATGATCGGAGAAGGTGGTTACGGAATCGTGTTCAGAGGCGTTTTCCCGGACGGCTCTGTAGTTGCTGTGAAGAATCTTCTAAACAACAAAGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAAGCCATTGGAAAAGTGAGGCATAAGAACCTGGTGCGTCTTATAGGCTATTGTGCAGAAGGTGCCAAAAGGATGCTTGTCTATGAATTTGTTGATAATGGCAATTTGGAGCAATGGCTGCATGGAAATGTAGGGCCCTTTAGCCCTCTTACGTGGGAAATTAGGATCAAGATTGCCATCGGAACAGCAAAAGGATTATCCTACTTGCATGAAGGATTAGAACCTAAAGTTGTTCACCGTGACATTAAATCCAGTAACATTCTTCTGGACAGAAAATGGAATCCAAAAGTTTCAGACTTTGGACTCGCCAAGCTCTTAGGTTCCGATACAAGCCACGTGACTACTCGTGTTATGGGGACTTTTGGTTATGTCTCCCCTGATTATGCAAGTACGGGCATGCTTAATGAAGGAAGCGATGTATATAGTTTTGGAGTCTTGCTAATGGAGATTATTACTGGACGAAGCCCTGTTGATTATTCAAGACCAGCTGGAGAGATGAACTTGGTTGATTGGTTTAAAGCAATGGTAGCTAATCGCCGTGGTGAAGAGATTGTAGATCCTCTGATTCAAATCCAGCCTTCTTCGAGAGCTTTGAAACGTATATTGCTCGTCTGTCTACGCTGCATAGATTTGGATGCTAGTAAGAGGCCCAAAATGGGGCAAATTGTTCATATGTTAGAGGCAGACGACTTCCCGTTTCGCTCAGAACTTCGAACTGCCCAGAAAGACCCTTATCCTTCGTCTCGTTCGGATTTGTCTGAGAAAGTTACATATCAATTGAAGCATGCTTGCATGGATGATGCAGAGAGATTTAAGAGATGA 1419 45.1 MSISRNHSGEVQDYNDSVPQDLTSKTPVSSTRIYVLIGIIAAFVIAAIFLIFFCIRTGRSSRKRKIRVKHSSGSIPLFSKEILEIKGSDHAEDCEKGEVRGGNVSPQKEKNEVEMGDGGEKSSGESADLSVETENIGWGRWYSLKELEMATCGFANENMIGEGGYGIVFRGVFPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLIGYCAEGAKRMLVYEFVDNGNLEQWLHGNVGPFSPLTWEIRIKIAIGTAKGLSYLHEGLEPKVVHRDIKSSNILLDRKWNPKVSDFGLAKLLGSDTSHVTTRVMGTFGYVSPDYASTGMLNEGSDVYSFGVLLMEIITGRSPVDYSRPAGEMNLVDWFKAMVANRRGEEIVDPLIQIQPSSRALKRILLVCLRCIDLDASKRPKMGQIVHMLEADDFPFRSELRTAQKDPYPSSRSDLSEKVTYQLKHACMDDAERFKR 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10205338 10208006 - Conep08aG0123200.1 Cone8ag1197 443746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1197 472 Pfam Protein tyrosine and serine/threonine kinase 157 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1197 472 PANTHER OS01G0323000 PROTEIN 18 450 IPR052232 -
Cone8ag1197 472 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Cone8ag1197 472 MobiDBLite consensus disorder prediction 93 121 - -
Cone8ag1197 472 Gene3D Phosphorylase Kinase; domain 1 121 229 - -
Cone8ag1197 472 Gene3D Transferase(Phosphotransferase) domain 1 230 438 - -
Cone8ag1197 472 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Cone8ag1197 472 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Cone8ag1197 472 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1197 472 MobiDBLite consensus disorder prediction 1 25 - -
Cone8ag1197 472 CDD STKc_IRAK 160 426 - -
Cone8ag1197 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1197 472 SMART serkin_6 154 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1197 472 MobiDBLite consensus disorder prediction 93 127 - -
Cone8ag1197 472 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0849 Cone-Chr17:6756706 Cone8ag1197 Cone-Chr8:10205338 3.14E-165 dispersed
Cone4ag1586 Cone-Chr4:12122766 Cone8ag1197 Cone-Chr8:10205338 5.44E-174 dispersed
Cone7ag1363 Cone-Chr7:9883587 Cone8ag1197 Cone-Chr8:10205338 9.83E-177 dispersed
Cone8ag1197 Cone-Chr8:10205338 Cone20ag1003 Cone-Chr20:7052299 3.99E-87 dispersed
Cone10ag1169 Cone-Chr10:8511197 Cone8ag1197 Cone-Chr8:10205338 3.14E-227 wgd
Cone12ag1149 Cone-Chr12:9172547 Cone8ag1197 Cone-Chr8:10205338 0 wgd
Cone3ag1161 Cone-Chr3:30254998 Cone8ag1197 Cone-Chr8:10205338 5.06E-219 wgd
Cone6ag1328 Cone-Chr6:10720027 Cone8ag1197 Cone-Chr8:10205338 9.87E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83131 PF00400 WD40 0.013 CL0186 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1197 - - - 0.0