Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1204 ATGAACACTGCATCGCCGGAGATGCTACAGTACTTTTTCAACAACGCCGCCGGAAACTTTCCAGACATGACCGTGTTGGAGAGGCAGAGAGCTCGTATCAAATGCCAGCAAGAGCAACAGCTTCAACATTTACAGAACCAACAAAACGGTAATAGTTACTTTAACTGGAGTGTGTTGGAAAGCGTTTTTTCTCTGCCGAGCTTTCAGGGCTTGACGGGAGATGTCGTGACTGGGCCGGTGAAGCCCAGCACGGAAAATGGGTGTCCCGGATTGGGCAAGTTTGAGCTGCCTGGAGTTGGGCTTGGTGTTGGGTCTAATTCTGAGATGGTGAATCTGAATGGATTTGAGCTGAATTCTGCGATTTCTAGAACGTCGAGCTGTCCGCCGGCGGCAGTTAATATGGCTGCGGTGGAGAAGGGAACTGAGTCGGTCTCGTCGGAAAAGTTGAGCTCTGCAGTTGGAAGAGAGAGCTTCAGGAAGAGAAAGGCTGATAAGATGCAGAACACAAAGGCTGTTTCGGAGGATGATATCAAGGAGAAAAAGATCAAAGTATATACAGAGGAAGGAGAATCAAAGATCACAGACCAGAACAGCATAAAAAACAACAGAGAAGCTTCTGGTGAAACATCAAAGGAGAATTCTAAAGCATCCGAGGCTCAAAAACCGGACTACATTCATGTTAGAGCGCGTAGAGGCCAAGCCACTGACAGTCATAGCTTAGCTGAAAGAGTAAGAAGGGAGAAGATTAGTGAAAGGATGAAGTATTTGCAGGATTTAGTACCAGGATGTAATAAAATCACAGGCAAAGCTGGAATGCTTGATGAAATTATCAACTACGTTCAATCTCTTCAACGACAAGTAGAGTTCCTGTCCATGAAATTAGCTGCTGTGAACCCAGGACTTGATTTCGATGTTGAAGATCTTGTTGCCAAAGAGGTTTTCCCTGCCTGCACAGCCAATTTTCCAGCGATAGGAATCTCACCAGAAATGACCGATTCATCTACCTATATTCAGTACAACCCTTCTGCGCAGCAAATGGTCTCTATTTGTGGTATGGGAATGGGTCTAAATCCTTCTTCTGATTTGGGTCTACGTAGAAGCATCAGTGCTCCGGTTTCTGTACCCGAAACATTTCTCGACTCCACCTTCTTCACTCAATTTCAACCCACTTCAGCTTGGGATTCTGATGTTCAAAATCTTCTCAACTCGGCATTTGATCTGGGAAGATCACCAACAACATTTCTTGCTTCTCAATCATTTACAGGCTCAATTGAAGCTAGCAACCTAAAGATGGAGATGTGA 1302 45.08 MNTASPEMLQYFFNNAAGNFPDMTVLERQRARIKCQQEQQLQHLQNQQNGNSYFNWSVLESVFSLPSFQGLTGDVVTGPVKPSTENGCPGLGKFELPGVGLGVGSNSEMVNLNGFELNSAISRTSSCPPAAVNMAAVEKGTESVSSEKLSSAVGRESFRKRKADKMQNTKAVSEDDIKEKKIKVYTEEGESKITDQNSIKNNREASGETSKENSKASEAQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPGLDFDVEDLVAKEVFPACTANFPAIGISPEMTDSSTYIQYNPSAQQMVSICGMGMGLNPSSDLGLRRSISAPVSVPETFLDSTFFTQFQPTSAWDSDVQNLLNSAFDLGRSPTTFLASQSFTGSIEASNLKMEM 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10239336 10242256 + Conep08aG0124000.1 Cone8ag1204 443753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1204 433 SMART finulus 239 289 IPR011598 GO:0046983(InterPro)
Cone8ag1204 433 MobiDBLite consensus disorder prediction 153 175 - -
Cone8ag1204 433 Gene3D - 230 301 IPR036638 GO:0046983(InterPro)
Cone8ag1204 433 MobiDBLite consensus disorder prediction 188 241 - -
Cone8ag1204 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 299 IPR036638 GO:0046983(InterPro)
Cone8ag1204 433 CDD bHLH_AtBPE_like 223 308 - -
Cone8ag1204 433 FunFam Basic helix-loop-helix transcription factor 230 302 - -
Cone8ag1204 433 Pfam Helix-loop-helix DNA-binding domain 237 284 IPR011598 GO:0046983(InterPro)
Cone8ag1204 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 283 IPR011598 GO:0046983(InterPro)
Cone8ag1204 433 MobiDBLite consensus disorder prediction 139 175 - -
Cone8ag1204 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 136 338 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone8ag1204 433 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0883 Cone-Chr19:6924175 Cone8ag1204 Cone-Chr8:10239336 1.93E-48 dispersed
Cone20ag0732 Cone-Chr20:5014150 Cone8ag1204 Cone-Chr8:10239336 3.18E-41 dispersed
Cone3ag0076 Cone-Chr3:436798 Cone8ag1204 Cone-Chr8:10239336 3.34E-42 dispersed
Cone6ag0499 Cone-Chr6:2493438 Cone8ag1204 Cone-Chr8:10239336 3.10E-51 dispersed
Cone7ag0587 Cone-Chr7:2818945 Cone8ag1204 Cone-Chr8:10239336 3.32E-18 dispersed
Cone8ag1204 Cone-Chr8:10239336 Cone9ag0512 Cone-Chr9:2454901 5.79E-50 dispersed
Cone12ag1155 Cone-Chr12:9213888 Cone8ag1204 Cone-Chr8:10239336 4.59E-254 wgd
Cone3ag1165 Cone-Chr3:30320347 Cone8ag1204 Cone-Chr8:10239336 2.23E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46709 PF01490 Aa_trans 2.00E-53 CL0062 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1204 - - - 0.0