Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1205 ATGGCATCGAAGAGCAAGATTCTGTTCATTGGAGGTACGGGTTATATCGGTAAATTCATCGTGGAAGCAAGCGCTAAGGCCGGTTACCCTACGTTTGCTCTGGTTAGAGAATCCACGCTCTCTAGCCCCGCCAAGTCCCAGATTATTGAGAAATTCAAGAGTTTAGGCGTCAAGTTCGTCCATGGAGATCTCTACGATCATGGGAGCCTTGTTAAGGCGATAAAGCAGGTTGATGTGGTTATATCAACTGTTGGGCAAGGTCAATTAGCCGATCAAGATAAGATCATCTCTGCCATTAAAGATGCTGGAACTGTCAAGAGATTTTTCCCTTCGGAGTTCGGAAATGACGTTGATCGTGTCCATGCAGTAGAGCCAGCAAAATCGGCTTTTGAGACAAAAGCTAAGATTCGCCGAGCCACTGAGGCAGCGGGAATTCCATACACTTATGTTTCCTCCAACTTTTTTGCTGGCTATTTTCTACCCACTTTGGCTCAGGCCGGTGCCACTGCTCCCCCCCGAGATAAAGTTGTTATCTTAGGTGATGGAACCCCAAAAGCAATTTTCAACGAGGAGAATGATATCGGTACCTATACAATCCGAGCTGTGGATGATCCAAGAACCTTGAACAAAGTCCTCTACATCAGACCCCCTGCAAATACCCTCTCATTCAATGACATTGTCTCACTGTGGGAGAAAAAGATCGGCAAAACTCTCGAAAGGGCCTATGTTCCAGAGGAGCAACTGCTCAAGAACATTCAAGAGGCCCCTGTACCAGTGAATGTTATACTAGCAATTGGTCACTCAGTTTTTGTGAAGGGAGACCATACCAACTTTGAGATCGAAGCATCGTTCGGAGTGGAAGCTTCCGAGCTCTATCCAGATGTCAAGTACACAACTGTGGATGAGTACCTTAACAAGTTTGTGTGA 927 46.06 MASKSKILFIGGTGYIGKFIVEASAKAGYPTFALVRESTLSSPAKSQIIEKFKSLGVKFVHGDLYDHGSLVKAIKQVDVVISTVGQGQLADQDKIISAIKDAGTVKRFFPSEFGNDVDRVHAVEPAKSAFETKAKIRRATEAAGIPYTYVSSNFFAGYFLPTLAQAGATAPPRDKVVILGDGTPKAIFNEENDIGTYTIRAVDDPRTLNKVLYIRPPANTLSFNDIVSLWEKKIGKTLERAYVPEEQLLKNIQEAPVPVNVILAIGHSVFVKGDHTNFEIEASFGVEASELYPDVKYTTVDEYLNKFV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10247344 10253193 + Conep08aG0124200.1 Cone8ag1205 443754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1205 308 Pfam NmrA-like family 7 297 IPR008030 -
Cone8ag1205 308 CDD PCBER_SDR_a 6 303 IPR045312 GO:0016491(InterPro)
Cone8ag1205 308 Gene3D - 6 294 - -
Cone8ag1205 308 PANTHER PINORESINOL REDUCTASE-RELATED 4 308 IPR050608 -
Cone8ag1205 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 276 IPR036291 -
Cone8ag1205 308 Gene3D - 154 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1205 K23050 - - mdm:103440394 538.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1157 Cone-Chr12:9224016 Cone8ag1205 Cone-Chr8:10247344 7.85E-210 dispersed
Cone4ag1199 Cone-Chr4:10096336 Cone8ag1205 Cone-Chr8:10247344 1.08E-79 dispersed
Cone6ag0473 Cone-Chr6:2332787 Cone8ag1205 Cone-Chr8:10247344 7.96E-69 dispersed
Cone8ag0519 Cone-Chr8:3701353 Cone8ag1205 Cone-Chr8:10247344 5.47E-85 dispersed
Cone8ag0520 Cone-Chr8:3712897 Cone8ag1205 Cone-Chr8:10247344 1.36E-85 dispersed
Cone8ag1205 Cone-Chr8:10247344 Cone9ag0486 Cone-Chr9:2320148 1.36E-73 dispersed
Cone12ag0769 Cone-Chr12:7059625 Cone8ag1205 Cone-Chr8:10247344 5.24E-129 transposed
Cone10ag0970 Cone-Chr10:6524150 Cone8ag1205 Cone-Chr8:10247344 1.56E-106 wgd
Cone12ag1156 Cone-Chr12:9218731 Cone8ag1205 Cone-Chr8:10247344 7.51E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g372 Blo02g00805 . . Bda08g00938 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1156 Cone8ag1205 . . . . . . . . . . . . . . Sed01g0300 . . . . . . Cpe16g00245 . Bhi10g01999 Tan05g1297 Cmetu11g2121 . Hepe08g1011 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234